gene detail

Gene description

TAIR ID: AT2G41850

Short description: polygalacturonase abscission zone A. thaliana

Pathogen responsiveness: -0.57

General responsiveness: 0.63

Orthologous

Rice:

Maize: No orthologous gene

Wheat:

GO biological process

fruit dehiscence, cell wall modification involved in abscission, anther dehiscence, floral organ abscission, carbohydrate metabolic process

GO cellular component

extracellular region, cell wall

GO molecular function

polygalacturonase activity

Protein domain

Pfam	PF00295, Glycosyl hydrolases family 28
SMART	SM00710, PbH1

Metabolic pathway

PWY-1081: homogalacturonan degradation

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT5G11260

Target:
none

Protein-protein interaction network

No Interactor

Coexpression network

No coexpression gene

Differentially expressed condition

7 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE18329	Col, WT, control	Col, WT, Hpa noco2 96 h	1.85	5.67E-11
GSE18329	Col, wrky72_1, control	Col, wrky72_1, Hpa noco2 96 h	1.83	5.03E-11
GSE18329	Col, wrky72_1, control	Col, wrky72_2, Hpa noco2 96 h	2.17	3.25E-12
GSE26679	Col, edr1, GC 0 h	Col, edr1, GC 36 h	2.70	1.45E-02
GSE37269	Ei2, WT, control	Ei2, WT, TEV 21 d	6.24	4.42E-09
GSE5520	Col, WT, control 7 h	Col, WT, PstDC3000 7 h	1.58	2.36E-02
GSE6556	Col, gh3.5, control	Col, gh3.5, PstDC3000 AvrRpt2 48 h	2.19	2.46E-07