gene detail

Gene description

TAIR ID: AT2G05100

Short description: photosystem II light harvesting complex gene 2.1

Pathogen responsiveness: NA

General responsiveness: NA

Orthologous

Rice:

OS03G0592500 OS01G0600900

Maize:

GRMZM2G018627 GRMZM2G414192

Wheat:

TA.27751.6.S1_AT

GO biological process

photosynthesis, light harvesting in photosystem I, light harvesting, protein-chromophore linkage, response to red light, light harvesting in photosystem II, response to low light intensity stimulus, response to desiccation, response to cold, response to blue light, response to far red light, response to high light intensity, response to light stimulus

GO cellular component

chloroplast envelope, PSII associated light-harvesting complex II, chloroplast thylakoid membrane, photosystem I, integral component of membrane, thylakoid, photosystem II, light-harvesting complex, membrane, plastoglobule, chloroplast

GO molecular function

metal ion binding, chlorophyll binding, pigment binding

Protein domain

Pfam	PF00504, Chlorophyll A-B binding protein

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

PATH:ath00196: Photosynthesis - antenna proteins

Transcriptional regulation

No regulation information

Protein-protein interaction network

The number of partners (degree) is: 1

click to view PPI network

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE56094_WT_HRPA-  view
GSE56094_WT_PSTDC3000  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view

Differentially expressed condition

13 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 12 h	-5.22	1.77E-14
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 8 h	-2.64	3.39E-10
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 12 h	-5.35	1.37E-14
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 8 h	-4.63	7.94E-14
GSE56094	Col, WT, control 10 h	Col, WT, PstDC3000 10 h	-2.48	3.68E-06
GSE56094	Col, WT, control 10 h	Col, WT, hrpA- 10 h	-1.59	5.64E-03
GSE56094	Col, WT, control 11 h	Col, WT, PstDC3000 11 h	-2.99	5.47E-08
GSE56094	Col, WT, control 11 h	Col, WT, hrpA- 11 h	-1.66	3.59E-03
GSE56094	Col, WT, control 12 h	Col, WT, PstDC3000 12 h	-2.99	5.26E-08
GSE56094	Col, WT, control 13 h	Col, WT, PstDC3000 13 h	-3.03	2.78E-08
GSE56094	Col, WT, control 8 h	Col, WT, hrpA- 8 h	-1.58	6.00E-03
GSE56094	Col, WT, control 9 h	Col, WT, PstDC3000 9 h	-2.25	4.40E-05
GSE56094	Col, WT, control 9 h	Col, WT, hrpA- 9 h	-2.57	8.77E-06