gene detail

Gene description

TAIR ID: AT2G04350

Short description: AMP-dependent synthetase and ligase family protein

Pathogen responsiveness: -1.99

General responsiveness: -0.93

Orthologous

Rice:

OS05G0317200

Maize:

GRMZM2G079236

Wheat: No orthologous gene

GO biological process

fatty acid metabolic process, fatty acid biosynthetic process, telomere maintenance

GO cellular component

chloroplast, endoplasmic reticulum, Golgi apparatus, chloroplast envelope, nuclear chromosome, telomeric region

GO molecular function

ATP binding, decanoate--CoA ligase activity, long-chain fatty acid-CoA ligase activity, single-stranded telomeric DNA binding

Protein domain

Pfam	PF00501, AMP-binding enzyme

Metabolic pathway

PWY-5136: fatty acid β-oxidation II (peroxisome)
PWY-5995: linoleate biosynthesis I (plants)
PWY-5143: fatty acid activation
PWY-6803: phosphatidylcholine acyl editing

KEGG pathway

PATH:ath01212: Fatty acid metabolism
PATH:ath00061: Fatty acid biosynthesis
PATH:ath00071: Fatty acid degradation
PATH:ath04146: Peroxisome

Transcriptional regulation

Regulator:
AT5G11260

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 3

click to view PPI network

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE26679_WT_GC  view
GSE13739_WT_GO  view
GSE13739_EDS16_GO  view
GSE5686_WT_GO  view
GSE56094_WT_PSTDC3000  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view
GSE26679_EDR1_GC  view

Differentially expressed condition

3 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE37269	St0, WT, control	St0, WT, TEV 21 d	-1.76	4.37E-03
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 8 h	1.51	4.99E-10
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 8 h	1.68	7.30E-11