Gene: AT1G80070
     


Gene description


TAIR ID: AT1G80070

Short description: Pre-mRNA-processing-splicing factor

Pathogen responsiveness: -3.29

General responsiveness: -2.67

Orthologous


Rice: No orthologous gene
Maize:

GRMZM2G099355  

Wheat:

TAAFFX.105444.1.S1_AT  


GO biological process


spliceosomal tri-snRNP complex assembly, alternative mRNA splicing, via spliceosome, mRNA splicing


GO cellular component


catalytic step 2 spliceosome, U5 snRNP, nucleus, chloroplast, membrane


GO molecular function


pre-mRNA intronic binding, U6 snRNA binding, U5 snRNA binding, second spliceosomal transesterification activity, protein binding, U2 snRNA binding, U1 snRNA binding


Protein domain


PfamPF08084, PROCT (NUC072) domain
PfamPF08083, PROCN (NUC071) domain
PfamPF10598, RNA recognition motif of the spliceosomal PrP8
PfamPF08082, PRO8NT (NUC069), PrP8 N-terminal domain
PfamPF10596, U6-snRNA interacting domain of PrP8
PfamPF12134, PRP8 domain IV core
PfamPF10597, U5-snRNA binding site 2 of PrP8
PfamPF01398, JAB1/Mov34/MPN/PAD-1 ubiquitin protease
SMARTSM00232, JAB_MPN

Metabolic pathway


Not involved in metabolic pathway


Transcriptional regulation


Regulator:
AT4G36990

Target:
none

Protein-protein interaction network


The number of partners (degree) is: 5

click to view PPI network

Differentially expressed condition


Copyright © 2017 Ziding Zhang's Lab - China Agricultural University. All Rights Reserved.