gene detail

Gene description

TAIR ID: AT1G76300

Short description: snRNP core protein SMD3

Pathogen responsiveness: -2.71

General responsiveness: -2.25

Orthologous

Rice: No orthologous gene

Maize: No orthologous gene

Wheat: No orthologous gene

GO biological process

spliceosomal complex assembly, mRNA splicing, via spliceosome, spliceosomal snRNP assembly

GO cellular component

pICln-Sm protein complex, nucleolus, cytosol, prespliceosome, nucleus, spliceosomal tri-snRNP complex, commitment complex, precatalytic spliceosome, U1 snRNP, SMN-Sm protein complex, U4 snRNP, small nucleolar ribonucleoprotein complex, nuclear body, catalytic step 2 spliceosome, U2 snRNP, U12-type spliceosomal complex, U5 snRNP

GO molecular function

RNA binding

Protein domain

Pfam	PF01423, LSM domain
SMART	SM00651, Sm

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

PATH:ath03040: Spliceosome

Transcriptional regulation

Regulator:
AT1G62300, AT4G31550

Target:
none

Protein-protein interaction network

No Interactor

Coexpression network

GSE56094_WT_HRPA-  view
GSE13739_WT_GO  view
GSE13739_EDS16_GO  view
GSE56094_WT_PSTDC3000  view

Differentially expressed condition

1 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE18978	Col, WT, control 24 h	Col, WT, PsmES4326 24 h	-1.72	2.53E-05