gene detail

Gene description

TAIR ID: AT1G66500

Short description: Pre-mRNA cleavage complex II

Pathogen responsiveness: NA

General responsiveness: 1.48

Orthologous

Rice: No orthologous gene

Maize: No orthologous gene

Wheat: No orthologous gene

GO biological process

unkown

GO cellular component

nucleus

GO molecular function

metal ion binding

Protein domain

No domain annotation

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

PATH:ath03015: mRNA surveillance pathway

Transcriptional regulation

Regulator:
AT5G61850, AT4G36990

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 6

Coexpression network

GSE45212_MED14_PSTDC3000_AVRRPT2 view

Differentially expressed condition

9 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE12856	Col, ataf1, control	Col, ataf1, Bg h	2.33	4.06E-04
GSE17464	Penta, control	Penta, PstDC3000 12 h	-1.73	4.70E-05
GSE18978	Col, WT, control 24 h	Col, WT, PsmES4326 24 h	1.74	1.18E-04
GSE2538	Col, WT, control	Col, WT, crab shell chitin 30 min	2.34	3.14E-05
GSE2538	Col, WT, control	Col, WT, purified chitin octamer 30 min	1.77	2.61E-04
GSE4746	Col, WT, water 30 min	Col, WT, chitooctaose 30 min	2.57	6.05E-04
GSE5520	Col, WT, control 10 h	Col, WT, Cor- 10 h	1.86	3.68E-02
GSE58954	Col, WT, Psm AvrRpt2 0 h	Col, WT, Psm AvrRpt2 6 h	2.08	1.94E-02
GSE9674	Ws-4, WT, control	Ws-4, WT, Xanthomonas strain Xcc147 6 h	1.76	1.58E-04