gene detail

Gene description

TAIR ID: AT1G60900

Short description: U2 snRNP auxilliary factor, large subunit, splicing factor

Pathogen responsiveness: NA

General responsiveness: NA

Orthologous

Rice:

OS11G0636900

Maize:

GRMZM5G813627

Wheat:

TA.6061.1.A1_AT

GO biological process

mRNA processing, RNA splicing

GO cellular component

nuclear speck, U2-type prespliceosome, U2AF, commitment complex, nucleus

GO molecular function

poly-pyrimidine tract binding, pre-mRNA 3'-splice site binding, protein binding

Protein domain

Pfam	PF00076, RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
SMART	SM00360, RRM

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

PATH:ath03040: Spliceosome

Transcriptional regulation

Regulator:
AT5G13790

Target:
none

Protein-protein interaction network

No Interactor

Coexpression network

No coexpression gene

Differentially expressed condition

1 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE37269	St0, WT, control	St0, WT, TEV 21 d	-1.65	1.04E-02