gene detail

Gene description

TAIR ID: AT1G47670

Short description: Transmembrane amino acid transporter family protein

Pathogen responsiveness: -0.92

General responsiveness: -0.59

Orthologous

Rice:

OS12G0485600

Maize:

GRMZM2G125832

Wheat: No orthologous gene

GO biological process

amino acid transport

GO cellular component

plasma membrane, membrane, integral component of membrane

GO molecular function

amino acid transmembrane transporter activity

Protein domain

Pfam	PF01490, Transmembrane amino acid transporter protein

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT4G16110

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 31 (Top5%)

click to view PPI network

Coexpression network

GSE26679_WT_GC  view
GSE56094_WT_HRPA-  view
GSE13739_WT_GO  view
GSE56094_WT_PSTDC3000  view
GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE13739_EDS16_GO  view
GSE26679_EDR1_GC  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view

Differentially expressed condition

8 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE17464	Laer, control	Laer, Alternaria brassicicola 3 d	1.72	3.90E-11
GSE26679	Col, WT, GC 0 h	Col, WT, GC 18 h	1.54	1.50E-07
GSE37269	Ei2, WT, control	Ei2, WT, TEV 21 d	-3.13	3.71E-06
GSE37269	Wt1, WT, control	Wt1, WT, TEV 21 d	-1.55	3.98E-02
GSE40544	Col, Sid2, control	Col, Sid2, PstDC3000 AvrRpt2	-1.58	9.55E-04
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 12 h	-1.78	7.13E-12
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 4 h	-1.62	3.22E-11
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 8 h	-1.86	3.23E-12