gene detail

Gene description

TAIR ID: AT1G33980

Short description: Smg-4/UPF3 family protein

Pathogen responsiveness: -2.75

General responsiveness: -2.79

Orthologous

Rice: No orthologous gene

Maize:

GRMZM2G380361

Wheat:

TAAFFX.9043.1.S1_AT

GO biological process

mRNA transport, nuclear-transcribed mRNA catabolic process, nonsense-mediated decay, long-day photoperiodism, defense response to bacterium, salicylic acid mediated signaling pathway, jasmonic acid mediated signaling pathway, response to wounding

GO cellular component

nucleus, cytoplasm, nucleolus

GO molecular function

unkown

Protein domain

Pfam	PF03467, Smg-4/UPF3 family

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

PATH:ath03013: RNA transport
PATH:ath03015: mRNA surveillance pathway

Transcriptional regulation

Regulator:
AT5G53660, AT3G16857, AT4G16110, AT5G61850

Target:
none

Protein-protein interaction network

No Interactor

Coexpression network

GSE13739_WT_GO  view
GSE13739_EDS16_GO  view
GSE5686_WT_GO  view

Differentially expressed condition

2 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE37269	Ei2, WT, control	Ei2, WT, TEV 21 d	-2.27	8.07E-03
GSE37269	St0, WT, control	St0, WT, TEV 21 d	-1.55	4.65E-02