Gene: AT1G27650
     

Gene description


TAIR ID: AT1G27650

Short description: U2 snRNP auxiliary factor small subunit, putative

Pathogen responsiveness: -1.29

General responsiveness: -1.56

Orthologous


Rice: No orthologous gene
Maize: No orthologous gene
Wheat: No orthologous gene

GO biological process


photoperiodism, flowering, mRNA splicing, via spliceosome


GO cellular component


nuclear speck, U2AF, nucleus, spliceosomal complex


GO molecular function


metal ion binding, pre-mRNA 3'-splice site binding, DNA binding


Protein domain


PfamPF00076, RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
PfamPF00642, Zinc finger C-x8-C-x5-C-x3-H type (and similar)
SMARTSM00361, RRM_1
SMARTSM00356, ZnF_C3H1

Metabolic pathway


Not involved in metabolic pathway


Transcriptional regulation


Regulator:
AT5G53660, AT5G41315

Target:
none

Protein-protein interaction network


The number of partners (degree) is: 6

click to view PPI network

Differentially expressed condition


10 conditions



SeriesControlTreatmentLog2FCAdj. P value
GSE17464Laer, controlLaer, Alternaria brassicicola 3 d1.816.11E-11
GSE17464Laer, controlLaer, PstDC3000 12 h2.628.13E-17
GSE17464Penta, controlPenta, Alternaria brassicicola 3 d1.641.29E-09
GSE17464Penta, controlPenta, PstDC3000 12 h2.234.88E-14
GSE26679Col, WT, GC 0 hCol, WT, GC 18 h1.913.73E-10
GSE26679Col, WT, GC 0 hCol, WT, GC 36 h1.845.63E-10
GSE26679Col, edr1, GC 0 hCol, edr1, GC 18 h2.173.03E-11
GSE26679Col, edr1, GC 0 hCol, edr1, GC 36 h2.064.33E-11
GSE37269Ei2, WT, controlEi2, WT, TEV 21 d-2.031.31E-02
GSE5520Col, WT, control 7 hCol, WT, PstDC3000 7 h1.513.88E-05






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