gene detail

Gene description

TAIR ID: AT1G26410

Short description: FAD-binding Berberine family protein

Pathogen responsiveness: 2.27

General responsiveness: -0.10

Orthologous

Rice: No orthologous gene

Maize: No orthologous gene

Wheat: No orthologous gene

GO biological process

cellular response to hypoxia, oxidation-reduction process

GO cellular component

cytoplasm, extracellular region

GO molecular function

oxidoreductase activity, acting on CH-OH group of donors, electron carrier activity, flavin adenine dinucleotide binding

Protein domain

Pfam	PF01565, FAD binding domain
Pfam	PF08031, Berberine and berberine like

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT3G16857, AT4G16110, AT4G31800

Target:
none

Protein-protein interaction network

No Interactor

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE56094_WT_HRPA-  view
GSE13739_WT_GO  view
GSE13739_EDS16_GO  view
GSE5686_WT_GO  view
GSE56094_WT_PSTDC3000  view

Differentially expressed condition

67 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE12856	Col, ataf1, control	Col, ataf1, Bg h	1.80	6.54E-06
GSE13739	Col, WT, control 0 h	Col, WT, G.orontii 5 d	2.02	2.76E-09
GSE13739	Col, WT, control 7 d	Col, WT, G.orontii 7 d	4.32	9.82E-21
GSE13739	Col, eds, control 7 d	Col, eds, G.orontii 7 d	3.25	3.50E-16
GSE16472	Col, WT, Flg22 0 min	Col, WT, Flg22 30 min	3.46	3.69E-02
GSE16472	Col, WT, Flg22 0 min	Col, WT, Flg22 60min	5.33	1.68E-02
GSE17382	Col, WT, Flg22 0 min	Col, WT, Flg22 60min	4.50	2.38E-03
GSE17464	Laer, JA+Flg22 0 h	Laer, JA+Flg22 1 h	3.73	1.75E-04
GSE17464	Laer, JA+Flg22 0 h	Laer, JA+Flg22 2 h	3.91	1.23E-04
GSE17464	Laer, control	Laer, Flg22 1 h	4.20	2.55E-06
GSE17464	Laer, control	Laer, Flg22 2 h	4.35	2.99E-06
GSE17464	Penta, control	Penta, Flg22 2 h	4.47	7.36E-07
GSE17464	Penta, control	Penta, Flg22 2 h	4.32	3.02E-06
GSE18329	Col, WT, control	Col, WT, Hpa noco2 96 h	1.88	3.84E-10
GSE18329	Col, wrky72_1, control	Col, wrky72_1, Hpa noco2 96 h	2.16	3.07E-11
GSE18329	Col, wrky72_1, control	Col, wrky72_2, Hpa noco2 96 h	2.53	2.59E-12
GSE18978	Col, WT, control 24 h	Col, WT, PsmES4326 24 h	2.41	6.06E-04
GSE2169	Col, WT, water	Col, WT, chitin 30 min	1.63	7.70E-04
GSE2169	Col, rre1, water	Col, rre1, chitin 30 min	1.80	2.69E-04
GSE2169	Col, rre2, water	Col, rre2, chitin 30 min	1.92	1.09E-04
GSE26206	Col, WT, control	Col, WT, R.solani_AG8 7 d	2.59	2.70E-06
GSE26679	Col, WT, GC 0 h	Col, WT, GC 96 h	4.04	3.56E-04
GSE26679	Col, edr1, GC 0 h	Col, edr1, GC 36 h	1.90	4.22E-02
GSE26679	Col, edr1, GC 0 h	Col, edr1, GC 96 h	2.32	2.08E-02
GSE37269	Ler0, WT, control	Ler0, WT, TEV 21 d	2.13	7.58E-03
GSE37269	St0, WT, control	St0, WT, TEV 21 d	2.40	1.11E-03
GSE40544	Col, WT, control	Col, WT, PstDC3000 AvrRpt2	4.48	2.64E-08
GSE40544	Col, WT, control	Col, WT, PstDC3000 EV	4.96	5.25E-09
GSE40544	Col, Sid2, control	Col, Sid2, PstDC3000 AvrRpt2	3.72	1.31E-07
GSE40544	Col, Sid2, control	Col, Sid2, PstDC3000 EV	3.00	4.16E-06
GSE50526	Col, WT, mock 24 h	Col, WT, A. brassicicola 24 h	4.05	6.10E-05
GSE50526	Col, WT, mock 9 h	Col, WT, A. brassicicola 9 h	4.97	1.78E-06
GSE52979	Col, WT, acetone	Col, WT, acetone flg22_24 h	4.32	4.73E-10
GSE52979	Col, WT, acetone	Col, WT, acetone flg22_2 h	4.69	1.04E-11
GSE52979	Col, WT, oxo_C14_HSL	Col, WT, oxo_C14_HSL flg22_24 h	3.85	1.44E-09
GSE52979	Col, WT, oxo_C14_HSL	Col, WT, oxo_C14_HSL flg22_2 h	4.88	4.71E-12
GSE5520	Col, WT, control 7 h	Col, WT, hrpA- 10 h	2.83	1.37E-02
GSE56094	Col, WT, control 10 h	Col, WT, PstDC3000 10 h	2.08	4.28E-03
GSE56094	Col, WT, control 10 h	Col, WT, hrpA- 10 h	3.91	5.95E-07
GSE56094	Col, WT, control 11 h	Col, WT, PstDC3000 11 h	1.93	9.84E-03
GSE56094	Col, WT, control 11 h	Col, WT, hrpA- 11 h	4.09	1.54E-07
GSE56094	Col, WT, control 12 h	Col, WT, PstDC3000 12 h	3.32	5.97E-06
GSE56094	Col, WT, control 12 h	Col, WT, hrpA- 12 h	3.84	3.52E-06
GSE56094	Col, WT, control 13 h	Col, WT, PstDC3000 13 h	3.49	1.70E-06
GSE56094	Col, WT, control 13 h	Col, WT, hrpA- 13 h	4.14	3.60E-07
GSE56094	Col, WT, control 3 h	Col, WT, hrpA- 3 h	2.39	4.11E-03
GSE56094	Col, WT, control 4 h	Col, WT, PstDC3000 4 h	2.99	1.71E-04
GSE56094	Col, WT, control 4 h	Col, WT, hrpA- 4 h	2.19	1.76E-02
GSE56094	Col, WT, control 5 h	Col, WT, hrpA- 5 h	2.09	1.35E-02
GSE56094	Col, WT, control 6 h	Col, WT, hrpA- 6 h	3.45	2.32E-05
GSE56094	Col, WT, control 7 h	Col, WT, hrpA- 7 h	2.87	3.13E-04
GSE56094	Col, WT, control 8 h	Col, WT, hrpA- 8 h	3.97	3.75E-07
GSE56094	Col, WT, control 9 h	Col, WT, PstDC3000 9 h	2.58	5.51E-04
GSE56094	Col, WT, control 9 h	Col, WT, hrpA- 9 h	3.96	5.53E-07
GSE5615	Col, WT, GST 4 h	Col, WT, GST+NPP1 4 h	3.58	2.34E-09
GSE5615	Col, WT, water 4 h	Col, WT, HrpZ 4 h	3.07	1.09E-08
GSE5616	Col, WT, water 12 h	Col, WT, P. infestans 12 h	2.45	9.17E-09
GSE5616	Col, WT, water 6 h	Col, WT, P. infestans 6 h	1.57	3.20E-07
GSE5686	Col, WT, control 5 d	Col, WT, G.orontii 5 d	2.90	1.46E-11
GSE6176	Col, WT, control 12 h	Col, WT, PstDC3000 HrpA- 12 h	3.07	6.82E-06
GSE6176	Col, WT, control 12 h	Col, WT, PstDC3000 12 h	1.92	2.55E-04
GSE6176	Col, WT, control 4 h	Col, WT, PstDC3000 HrpA- 4 h	1.59	2.18E-02
GSE62537	Col, WT, control 48 h	Col, WT, V.longisporum 48 h	2.87	2.18E-05
GSE62537	Col, ndr1, control 48 h	Col, ndr1, V.longisporum 48 h	3.05	2.08E-05
GSE9674	Ws-4, AtMYB30 ox, control	Ws-4, AtMYB30 ox, Xanthomonas strain Xcc147 2-4 h	2.06	5.03E-06
GSE9674	Ws-4, AtMYB30 ox, control	Ws-4, AtMYB30 ox, Xanthomonas strain Xcc147 6 h	2.23	6.75E-06
GSE9674	Ws-4, WT, control	Ws-4, WT, Xanthomonas strain Xcc147 6 h	2.14	1.25E-05