gene detail

Gene description

TAIR ID: AT1G21190

Short description: Small nuclear ribonucleoprotein family protein

Pathogen responsiveness: -2.81

General responsiveness: -2.33

Orthologous

Rice: No orthologous gene

Maize: No orthologous gene

Wheat:

TA.3544.1.S1_X_AT TA.14453.1.S1_AT

GO biological process

cytoplasmic mRNA processing body assembly, mRNA splicing, via spliceosome, nuclear-transcribed mRNA catabolic process

GO cellular component

precatalytic spliceosome, small nucleolar ribonucleoprotein complex, U6 snRNP, P-body, nucleus, U4/U6 x U5 tri-snRNP complex, catalytic step 2 spliceosome, Lsm1-7-Pat1 complex

GO molecular function

RNA binding

Protein domain

Pfam	PF01423, LSM domain
SMART	SM00651, Sm

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

PATH:ath03040: Spliceosome
PATH:ath03018: RNA degradation

Transcriptional regulation

No regulation information

Protein-protein interaction network

The number of partners (degree) is: 1

click to view PPI network

Coexpression network

GSE13739_WT_GO  view
GSE13739_EDS16_GO  view
GSE5686_WT_GO  view

Differentially expressed condition