Gene: AT1G20780
     

Gene description


TAIR ID: AT1G20780

Short description: senescence-associated E3 ubiquitin ligase 1

Pathogen responsiveness: -1.30

General responsiveness: -3.04

Orthologous


Rice:

OS12G0277400  

Maize: No orthologous gene
Wheat: No orthologous gene

GO biological process


regulation of chlorophyll biosynthetic process, leaf senescence, protein ubiquitination, regulation of chlorophyll catabolic process, regulation of abscisic acid biosynthetic process, negative regulation of abscisic acid biosynthetic process


GO cellular component


cytoplasm, plasma membrane, nucleus


GO molecular function


transmembrane receptor protein serine/threonine kinase binding, protein binding, ubiquitin-protein transferase activity


Protein domain


PfamPF00514, Armadillo/beta-catenin-like repeat
PfamPF04564, U-box domain
SMARTSM00504, Ubox
SMARTSM00185, ARM

Metabolic pathway


Not involved in metabolic pathway


KEGG pathway


Not involved in KEGG pathway


Transcriptional regulation


Regulator:
AT5G13790

Target:
none

Protein-protein interaction network


The number of partners (degree) is: 2

click to view PPI network

Differentially expressed condition


8 conditions



SeriesControlTreatmentLog2FCAdj. P value
GSE37269Ei2, WT, controlEi2, WT, TEV 21 d-1.561.91E-02
GSE45212Col, WT, PstDC3000 AvrRpt2 0 hCol, WT, PstDC3000 AvrRpt2 12 h2.074.31E-15
GSE45212Col, WT, PstDC3000 AvrRpt2 0 hCol, WT, PstDC3000 AvrRpt2 8 h1.852.74E-14
GSE45212Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 4 h1.513.73E-13
GSE45212Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 8 h1.532.06E-13
GSE45214Col, WT, PstDC3000 AvrRpt2 0 hCol, WT, PstDC3000 AvrRpt2 4 h1.791.10E-10
GSE45214Col, med16, PstDC3000 AvrRpt2 0 hCol, med16, PstDC3000 AvrRpt2 4 h2.094.62E-12
GSE45214Col, npr1, PstDC3000 AvrRpt2 0 hCol, npr1, PstDC3000 AvrRpt2 4 h1.599.35E-10






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