gene detail

Gene description

TAIR ID: AT1G20090

Short description: RHO-related protein from plants 2

Pathogen responsiveness: -1.45

General responsiveness: -2.02

Orthologous

Rice: No orthologous gene

Maize: No orthologous gene

Wheat: No orthologous gene

GO biological process

cell morphogenesis, small GTPase mediated signal transduction, microtubule cytoskeleton organization, regulation of stomatal movement, pollen tube growth, response to light stimulus

GO cellular component

nucleolus, plasma membrane, cytoplasm, nucleus

GO molecular function

protein binding

Protein domain

Pfam	PF00071, Ras family
SMART	SM00174, RHO
SMART	SM00173, RAS
SMART	SM00175, RAB

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

PATH:ath04145: Phagosome
PATH:ath04933: AGE-RAGE signaling pathway in diabetic complications

Transcriptional regulation

Regulator:
AT5G12870, AT3G24050, AT2G38250, AT4G34680, AT2G45050, AT3G60530, AT3G08500

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 9 (Top20%)

click to view PPI network

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE26679_WT_GC  view
GSE13739_WT_GO  view
GSE13739_EDS16_GO  view
GSE5686_WT_GO  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view
GSE26679_EDR1_GC  view

Differentially expressed condition

4 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 12 h	-1.56	8.50E-13
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 8 h	-2.09	1.29E-14
GSE5520	Col, WT, control 10 h	Col, WT, Cor- 10 h	-1.77	5.18E-05
GSE9674	Ws-4, AtMYB30 ox, control	Ws-4, AtMYB30 ox, Xanthomonas strain Xcc147 6 h	-1.68	2.62E-03