gene detail

Gene description

TAIR ID: AT1G19680

Short description: RING/U-box superfamily protein

Pathogen responsiveness: -1.12

General responsiveness: -3.08

Orthologous

Rice: No orthologous gene

Maize: No orthologous gene

Wheat: No orthologous gene

GO biological process

unkown

GO cellular component

nucleus

GO molecular function

unkown

Protein domain

SMART

SM00184, RING

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT5G07100, AT5G11260, AT5G22570, AT2G46130

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 3

Coexpression network

Differentially expressed condition

12 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE17464	Laer, control	Laer, PstDC3000 12 h	2.13	2.41E-12
GSE17464	Penta, control	Penta, PstDC3000 12 h	1.90	8.68E-11
GSE17500	Col, 35S:AFB1, control 0 h	Col, 35S:AFB1, PstDC3000 24 h	1.57	3.54E-06
GSE17500	Col, WT, control 0 h	Col, WT, PstDC3000 24 h	1.62	1.13E-06
GSE17500	Col, miR393, control 0 h	Col, miR393, PstDC3000 24 h	1.55	3.32E-06
GSE21920	Col, ulp1, mock	Col, ulp1, Pto 6 h	1.56	4.37E-05
GSE26679	Col, WT, GC 0 h	Col, WT, GC 18 h	1.88	1.67E-10
GSE26679	Col, edr1, GC 0 h	Col, edr1, GC 18 h	2.11	1.64E-11
GSE26679	Col, edr1, GC 0 h	Col, edr1, GC 36 h	1.51	4.15E-09
GSE40544	Col, Sid2, control	Col, Sid2, PstDC3000 EV	1.71	3.04E-06
GSE5520	Col, WT, control 24 h	Col, WT, PstDC3000 24 h	2.34	3.48E-09
GSE56094	Col, WT, control 8 h	Col, WT, PstDC3000 8 h	1.53	2.30E-11