gene detail

Gene description

TAIR ID: AT1G17050

Short description: solanesyl diphosphate synthase 2

Pathogen responsiveness: -0.18

General responsiveness: 0.80

Orthologous

Rice:

OS12G0271700 OS01G0703400

Maize:

GRMZM2G112728

Wheat: No orthologous gene

GO biological process

photosynthesis, isoprenoid biosynthetic process, plastoquinone biosynthetic process

GO cellular component

chloroplast, chloroplast stroma, plastid

GO molecular function

metal ion binding, trans-octaprenyltranstransferase activity, all-trans-nonaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) activity

Protein domain

Pfam	PF00348, Polyprenyl synthetase

Metabolic pathway

KEGG pathway

PATH:ath00900: Terpenoid backbone biosynthesis

Transcriptional regulation

No regulation information

Protein-protein interaction network

The number of partners (degree) is: 1

click to view PPI network

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE26679_WT_GC  view
GSE56094_WT_HRPA-  view
GSE13739_WT_GO  view
GSE13739_EDS16_GO  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view
GSE26679_EDR1_GC  view

Differentially expressed condition

21 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE12856	Col, ataf1, control	Col, ataf1, Bg h	-1.64	2.23E-07
GSE17464	Laer, JA+Flg22 0 h	Laer, JA+Flg22 2 h	-1.86	5.79E-04
GSE17464	Laer, control	Laer, Alternaria brassicicola 3 d	-1.61	8.18E-04
GSE17464	Laer, control	Laer, PstDC3000 12 h	-1.56	1.33E-03
GSE17464	Penta, control	Penta, Alternaria brassicicola 3 d	-1.85	1.03E-04
GSE17464	Penta, control	Penta, PstDC3000 12 h	-2.14	8.09E-06
GSE26679	Col, WT, GC 0 h	Col, WT, GC 18 h	-1.75	7.04E-11
GSE26679	Col, WT, GC 0 h	Col, WT, GC 36 h	-2.71	1.23E-14
GSE26679	Col, edr1, GC 0 h	Col, edr1, GC 18 h	-2.00	5.04E-12
GSE26679	Col, edr1, GC 0 h	Col, edr1, GC 36 h	-3.19	3.57E-16
GSE37269	St0, WT, control	St0, WT, TEV 21 d	-1.59	5.61E-03
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 12 h	-1.72	1.41E-12
GSE5520	Col, WT, control 10 h	Col, WT, Cor- 10 h	-1.81	1.82E-02
GSE5520	Col, WT, control 7 h	Col, WT, PstDC3000 7 h	-1.96	2.40E-03
GSE56094	Col, WT, control 10 h	Col, WT, PstDC3000 10 h	-2.11	1.02E-18
GSE56094	Col, WT, control 11 h	Col, WT, PstDC3000 11 h	-1.73	7.66E-14
GSE56094	Col, WT, control 13 h	Col, WT, PstDC3000 13 h	-1.55	3.18E-12
GSE56094	Col, WT, control 8 h	Col, WT, PstDC3000 8 h	-1.62	1.81E-12
GSE6176	Col, WT, control 12 h	Col, WT, PstDC3000 12 h	-1.66	2.50E-06
GSE6556	Col, WT, control	Col, WT, PstDC3000 AvrRpt2 48 h	-1.56	1.86E-02
GSE9674	Ws-4, WT, control	Ws-4, WT, Xanthomonas strain Xcc147 90-105 min	2.31	2.47E-02