gene detail

Gene description

TAIR ID: AT1G13180

Short description: Actin-like ATPase superfamily protein

Pathogen responsiveness: -0.75

General responsiveness: -1.62

Orthologous

Rice: No orthologous gene

Maize:

GRMZM2G092459

Wheat: No orthologous gene

GO biological process

multicellular organism development, trichome morphogenesis, actin filament organization, cell morphogenesis, multidimensional cell growth, Arp2/3 complex-mediated actin nucleation

GO cellular component

cytosol, cytoplasm

GO molecular function

actin binding, ATP binding

Protein domain

Pfam	PF00022, Actin
SMART	SM00268, ACTIN

Metabolic pathway

PWY-6842: glutathione-mediated detoxification II

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT3G24050, AT4G34680, AT2G45050, AT3G60530, AT5G41315, AT2G47190

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 9 (Top20%)

click to view PPI network

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE13739_EDS16_GO  view
GSE56094_WT_PSTDC3000  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view

Differentially expressed condition

14 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE17464	Laer, control	Laer, Flg22 1 h	1.71	2.24E-05
GSE17464	Laer, control	Laer, Flg22 2 h	1.88	8.35E-06
GSE17464	Penta, control	Penta, Flg22 2 h	1.75	1.56E-05
GSE17464	Penta, control	Penta, Flg22 2 h	1.99	2.90E-06
GSE17500	Col, WT, control 0 h	Col, WT, PstDC3000 24 h	1.52	8.02E-06
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 12 h	1.70	8.23E-11
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 8 h	1.87	2.74E-11
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 4 h	2.15	3.80E-12
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 8 h	1.88	1.76E-11
GSE45214	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 4 h	1.69	1.62E-10
GSE45214	Col, med16, PstDC3000 AvrRpt2 0 h	Col, med16, PstDC3000 AvrRpt2 4 h	1.85	1.65E-11
GSE58954	Col, WT, Psm AvrRpt2 0 h	Col, WT, Psm AvrRpt2 6 h	2.47	1.36E-03
GSE9674	Ws-4, AtMYB30 ox, control	Ws-4, AtMYB30 ox, Xanthomonas strain Xcc147 6 h	1.79	4.19E-04
GSE9674	Ws-4, WT, control	Ws-4, WT, Xanthomonas strain Xcc147 6 h	1.56	1.20E-03