gene detail

Gene description

TAIR ID: AT1G11400

Short description: partner of Y14-MAGO

Pathogen responsiveness: -1.41

General responsiveness: -1.51

Orthologous

Rice: No orthologous gene

Maize:

GRMZM2G180558

Wheat: No orthologous gene

GO biological process

nuclear-transcribed mRNA catabolic process, nonsense-mediated decay, regulation of translation, positive regulation of gene expression, mRNA transport

GO cellular component

nucleoplasm, nucleus, nucleolus, cytoplasm

GO molecular function

RNA binding

Protein domain

Pfam	PF09282, Mago binding
SMART	SM01273, Mago-bind

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

PATH:ath03013: RNA transport
PATH:ath03015: mRNA surveillance pathway

Transcriptional regulation

Regulator:
AT5G53660, AT4G36990

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 2

click to view PPI network

Coexpression network

GSE26679_WT_GC view
GSE26679_EDR1_GC view

Differentially expressed condition

10 conditions

Show entries

Search:

Series	Control	Treatment	Log₂FC	Adj. P value
GSE26679	Col, edr1, GC 0 h	Col, edr1, GC 36 h	2.14	1.01E-11
GSE26679	Col, edr1, GC 0 h	Col, edr1, GC 18 h	2.02	4.85E-11
GSE5520	Col, WT, control 10 h	Col, WT, Cor- 10 h	2.01	3.20E-07
GSE26679	Col, WT, GC 0 h	Col, WT, GC 18 h	1.91	1.64E-10
GSE5520	Col, WT, control 7 h	Col, WT, PstDC3000 7 h	1.91	1.33E-08
GSE26679	Col, WT, GC 0 h	Col, WT, GC 36 h	1.81	3.69E-10
GSE6176	Col, WT, control 12 h	Col, WT, PstDC3000 12 h	1.65	1.82E-07
GSE17500	Col, WT, control 0 h	Col, WT, PstDC3000 24 h	1.63	1.51E-04
GSE21920	Col, ulp1, mock	Col, ulp1, Pto 6 h	1.54	2.76E-06
GSE21920	Col, WT, mock	Col, WT, Pto HopZ1a 6 h	1.53	3.23E-08

Showing 1 to 10 of 10 entries

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