Gene: AT1G01040
     


Gene description


TAIR ID: AT1G01040

Short description: dicer-like 1

Pathogen responsiveness: -2.73

General responsiveness: -3.03

Orthologous


Rice: No orthologous gene
Maize:

GRMZM2G040762  

Wheat: No orthologous gene

GO biological process


production of lsiRNA involved in RNA interference, seed morphogenesis, cytokinesis, embryonic pattern specification, virus induced gene silencing, RNA processing, gene silencing by RNA, production of ta-siRNAs involved in RNA interference, mRNA cleavage involved in gene silencing by miRNA, rRNA catabolic process, vegetative to reproductive phase transition of meristem, primary miRNA processing, flower development, suspensor development, production of miRNAs involved in gene silencing by miRNA, regulation of seed maturation


GO cellular component


RISC complex, nuclear dicing body, cytoplasm, nucleus


GO molecular function


protein binding, ribonuclease III activity, ATP-dependent helicase activity, RNA binding, ATP binding, helicase activity, DNA binding, metal ion binding


Protein domain


PfamPF00636, Ribonuclease III domain
PfamPF04851, Type III restriction enzyme, res subunit
PfamPF14709, double strand RNA binding domain from DEAD END PROTEIN 1
PfamPF00035, Double-stranded RNA binding motif
PfamPF03368, Dicer dimerisation domain
PfamPF02170, PAZ domain
PfamPF00271, Helicase conserved C-terminal domain
SMARTSM00490, HELICc
SMARTSM00487, DEXDc
SMARTSM00535, RIBOc
SMARTSM00358, DSRM
SMARTSM00949, PAZ

Metabolic pathway


Not involved in metabolic pathway


KEGG pathway


Not involved in KEGG pathway


Transcriptional regulation


Regulator:
AT5G13790, AT2G02820, AT1G14350

Target:
none

Protein-protein interaction network


The number of partners (degree) is: 13 (Top20%)

click to view PPI network

Differentially expressed condition


Copyright © 2017 Ziding Zhang's Lab - China Agricultural University. All Rights Reserved.