Services

Here are some links of tools and databases for protein bioinformatics.

Antibody Numbering

ANARCI	http://opig.stats.ox.ac.uk/webapps/newsabdab/sabpred/anarci/
Abnum	http://www.bioinf.org.uk/abs/abnum/

Search and Alignment

IMGT	http://www.imgt.org/
IEDB	http://www.iedb.org/
SAbDab	http://opig.stats.ox.ac.uk/webapps/newsabdab/sabdab/
OAS	http://opig.stats.ox.ac.uk/webapps/oas/
IgBlast	https://www.ncbi.nlm.nih.gov/igblast/
Abysis	http://www.abysis.org/abysis/

Modeling

Phyre2	http://www.sbg.bio.ic.ac.uk/phyre2/html/page.cgi?id=index
Rosetta antibody	http://rosie.rosettacommons.org/antibody
SAbPred	http://opig.stats.ox.ac.uk/webapps/newsabdab/sabpred/
Kotai	https://sysimm.ifrec.osaka-u.ac.jp/kotaiab/
Discovery Studio	https://www.3ds.com/products-services/biovia/products/molecular-modeling-simulation/biovia-discovery-studio/
ABodyBuilder	http://opig.stats.ox.ac.uk/webapps/newsabdab/sabpred/abodybuilder/
MODELLER	https://salilab.org/modeller/
Sphinx	http://opig.stats.ox.ac.uk/webapps/newsabdab/sabpred/sphinx
FREAD	http://opig.stats.ox.ac.uk/webapps/newsabdab/sabpred/fread/
PLOP	https://www.jacobsonlab.org/plop_manual/plop_overview.htm
INPS	http://inpsmd.biocomp.unibo.it

Visualization

PyMOL	https://www.pymol.org/
PDBViewer	http://spdbv.vital-it.ch/disclaim.html
UCSF Chimera	http://www.cgl.ucsf.edu/chimera/

Epitope Prediction

BepiPred-2.0	http://www.cbs.dtu.dk/services/BepiPred/
EpiPred	http://opig.stats.ox.ac.uk/webapps/newsabdab/sabpred/epipred/