Input parameters:

  Query = CsaV3_4G034460 (Len=447)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_4G034460, Len=447):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MVLLVASSSIDSGIGCWDLHTGSEQLRYKSCASPPHGLVCVGRKFLACSQLRDPAATAGSVLYWSWSKPQVEVKSFPAEP 80  
WD40-rpts                           (___________________WD 1___________________)(______________

Query       81 IMALASNHEGTYIVGGGFSGDIYLWEVLSGRLLKKWHAHYRAVTCLVFSEDDSLLVSGSEDGCIRVWSLITVFDDGWQRE 160 
WD40-rpts      ____WD 2_________________)   (_________________WD 3________________)            

Query      161 AKHLYEHSFTGHNLPVTDIVVGYGGFNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKI 240 
WD40-rpts        (__________________WD 4_________________)   (________________WD 5_____________

Query      241 YTAALNAKCPSSSDYGLHILGSISNQSKSVTSLAYCSSGNLLISGSEDGAIRVWDTRTNNVIRVFRHSKGPVNNILLVQQ 320 
WD40-rpts      ___)            (_________________WD 6________________)   (_________________WD 7

Query      321 QPLPKSQSTSQGSLRKHRPLLPPALAKFENSKDEDEYTGVIIDPSGPPKESTGFSFLSSHVMDDQITELQQQGSAATGME 400 
WD40-rpts      _________________)     (_________________WD 8_________________)                 

Query      401 LERLKHDYGKSKQMLQHWRKMYDNLHQFCVNELLDGNQTKNIEGNST 447 
WD40-rpts                                                     

8 WD40-repeats found in QUERY=CsaV3_4G034460 (Len=447):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    22-65       6.49  382.58  0.00043       12.5%     54.75
  WD 2:  Seg  7    66-106      8.46  464.16  3.5e-05       17.5%     55.10
  WD 3:  Seg 11   110-148     10.48  547.66  2.6e-06       47.5%     54.92
  WD 4:  Seg 15   163-203      7.29  415.88  0.00015       30.0%     53.52
  WD 5:  Seg 19   207-244      7.47  423.14  0.00012       22.5%     57.54
  WD 6:  Seg 23   257-295      9.71  515.67  7.0e-06       42.5%     53.00
  WD 7:  Seg 27   299-338      6.13  367.86  0.00069       12.5%     38.28
  WD 8:  Seg 30   344-383      5.87  356.98  0.00096       20.0%     51.20

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   22-65     -GS-EQLRYKSCASPPHGLVCVGRKFLACS--Q-LRDPAATA-GSVLYWS
   WD 2   66-106    WSKPQVEVKSFPAEP-----IMALASNHEG--T-YIVGGGFS-GDIYLWE
   WD 3  110-148    -GR-LLKKWHAHYRA-----VTCLVFSEDD--S-LLVSGSED-GCIRVWS
   WD 4  163-203    -HL-YEHSFTGHNLP-----VTDIVVGYGGFNA-IIISSSVD-RTCKVWS
   WD 5  207-244    -GK-LLRNI-IFPSI-----IDAIALDPGE--H-VFYGGGRD-GKIYTAA
   WD 6  257-295    -LH-ILGSISNQSKS-----VTSLAYCSSG--N-LLISGSED-GAIRVWD
   WD 7  299-338    -NN-VIRVFRHSKGP-----VNNILLVQQQ--P-LPKSQSTSQGSLRKHR
   WD 8  344-383    -AL-AKFENSKDEDE-----YTGVIIDPSG--PPKESTGFSF-LSSHVMD

   WD40 Template    TGE-CLRTLSGHTSG-----VTSVSFSPDG--K-RLVSGSED-GTIKVWD