Input parameters:

  Query = FBpp0311819 (Len=1621)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0311819, Len=1621):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTSAVRAKSAAAAVGVAVDESSGSSNGSVADQEVASSKEAVLSVLIRKRYEKYVFAPWDDPIILIMEQLEHIEHCRSAAL 80  
WD40-rpts                                                                                      

Query       81 GNQVAIGRDPSQDDSLNDLGKVISNMRQDQSLVPIVKHIEQISDIQASNGQELASLGSLRELIRTIRKEWPRDDSIKLRL 160 
WD40-rpts                                                                                      

Query      161 KEIQILGMPPARSLCFGERIRDDRCPLSLQTKRHKERIQAMMYERQPWRIRERMKTASVALVLCLNIGVDPPDVVKIQPC 240 
WD40-rpts                                                                                      

Query      241 SRLECWIDPSSVSPPKAMELIGSNLQMQYERWQPRARYKKCNDPTVDDVKKLCTSLRRNAKGERILFHYNGHGVPKPTAN 320 
WD40-rpts                                                                                      

Query      321 GEIWVFNKTFTQYIPLSIFELITWMSAPSIYVYDCSNAGIIINSFQPYAKQHEEELGKALAAAQQRGGVQQLVGGSGGAA 400 
WD40-rpts                                                                                      

Query      401 NVAANQVQLTNQMVSYKNCIHLAACAANEILPMNAQLPADLFTSCLTTPINIALKWYAMQEKLGMVPRIQSELIDKIPGK 480 
WD40-rpts                                                                                      

Query      481 VNDRRTMMGELNWIFTAITDTIAWNTLPRELFQRLFRQDLLVASLFRNFLLAERILRSHDCTPVSLPALPPCYRHPMWKA 560 
WD40-rpts                                                                                      

Query      561 WDLVVDLALQQLPEILDHNAPYRQLPFFEHQLTAFQVWLDSESESRTPPEQLPIVLQVLLSQVHRLRALELLARFLDLGP 640 
WD40-rpts                                                                                      

Query      641 WAVNLALGVGIFPYVLKLLQSSTRELRPVLVFIWAKILAVDPSCQVDLVKEYKYFLSVLQDTSVSKEHRTLSAFVLSSIV 720 
WD40-rpts                                                                                      

Query      721 HNFLLGQTSALQGPLLSICLEQLNDGSWLLRQWLAICLGMLWQNFEKARWSGARDLAHEKLYVLLRDSIPEVRAAAVFAL 800 
WD40-rpts                                                                                      

Query      801 GTFISSVTDRSEEQANNIDRIIAITMLETVGEDMSPLVRMELAAALQWMVVLFESQFVAVYLTEHMRGHVSAASFVMCPD 880 
WD40-rpts                                                                                      

Query      881 PRDLTSSTHSLERHVTIRRGASSSSISNMGGASISSGTGSSSNPLGRSKSGSGSSGGRGAAGAAGGTNSIPFQSIFTKLW 960 
WD40-rpts                                                                                      

Query      961 LGICNLAQDPFPRVAAIAQEIVEHVRDTALCPIMAAKEATMANASEKCSSLSVSLPPSPNTRVNYLGGGGAPGGAGATAE 1040
WD40-rpts                                                                                      

Query     1041 SPPVGAAASGASHWAQKLRLSGSGACMGAGDPQTILQRKLRTSSINDETDSGPGYSRGVAGAGTGLGLPSGPRESTHSAR 1120
WD40-rpts                                                                                      

Query     1121 SSGSESNHYLEPGHSLTPIVLTEFIPWAISYFTRPGKERYSSAEGSAEEGRQRFPVDRNSAELRRRRLRFLRNDFVRRHA 1200
WD40-rpts                                                                                      

Query     1201 GRKHQELIDPYGFDVCVWNRKTQFTPSIVKLLPYEPQIAVAYREKVLVYDFQYNSVRTYGAESLGGNFTGYSSGYGSGSG 1280
WD40-rpts                                                                                      

Query     1281 SSSSLNGSTPRKSGAHTSGGGGGGFSAAPFARVSSIEFINAQDMALNLVAHEDGVVRVWQSSPPASSATSEDTPSKARLV 1360
WD40-rpts                         (__________________WD 1_________________)    (_______________

Query     1361 TAWTALGQVNQHNHRQRSVASGGSIGKGADASGLSSAAIGSGGIVTAWQQCSQHLVIGGGGCRFIRIWDVERELKLADIP 1440
WD40-rpts      __WD 2________________)       (_________________WD 3________________)   (_______

Query     1441 LGRSETCARVLSPYLPNMRSDVILAGCDDGSVRLFDKRCAPQDAGISVYRRHSAPILHASLRANGLVLVSGCTEGRISVA 1520
WD40-rpts      ____________WD 4___________________)      (_________________WD 5________________

Query     1521 DMRGSQSSINPFDVVYEWDAGGDVTAITSHQLEDTVACGNASKIVIYSLDGRQQKVLRTNEGFIGPKIGHPTYLYFHPYK 1600
WD40-rpts      )         (________________WD 6________________)  (____________________WD 7_____

Query     1601 AQLAVGFVDNTVAIYSPTPVL 1621
WD40-rpts      _______________)     

7 WD40-repeats found in QUERY=FBpp0311819 (Len=1621):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 16  1300-1340     6.72  392.27  0.00032       25.0%     40.44
  WD 2:  Seg 19  1345-1383     4.10  284.20  0.00917        2.5%     20.75
  WD 3:  Seg 20  1391-1429     3.49  258.75  0.02010       15.0%     41.35
  WD 4:  Seg 23  1433-1476     4.89  316.73  0.00335       20.0%     52.29
  WD 5:  Seg 27  1483-1521     7.91  441.20  7.0e-05       27.5%     50.93
  WD 6:  Seg 31  1531-1568     3.87  274.40  0.01242       10.0%     51.25
  WD 7:  Seg 35  1571-1616     6.01  363.04  0.00080       22.5%     52.74

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1 1300-1340   GGGGGFSAAPFA-------RVSSIEFINAQ-----DMALNLVAHEDGVVRVWQ
   WD 2 1345-1383   ASSATSEDTPSK-------ARLVTAW--TA-----LGQVNQHNHRQRSVASGG
   WD 3 1391-1429   ASGLSSAAIGSG-------GIVTAWQ--QC-----SQHLVIGGGGCRFIRIWD
   WD 4 1433-1476   ELKLADIPLGRS-------ETCARVL--SPYLPNMRSDVILAGCDDGSVRLFD
   WD 5 1483-1521   DAGISVYRRHSA-------PILHASL--RA-----NGLVLVSGCTEGRISVAD
   WD 6 1531-1568   PFDVVYEWDAGG-------DVTAITS--HQ-----LEDTVACGN-ASKIVIYS
   WD 7 1571-1616   GRQQKVLRTNEGFIGPKIGHPTYLYF--HP-----YKAQLAVGFVDNTVAIYS

   WD40 Template    GECLRTLSGHTS-------GVTSVSF--SP-----DGKRLVSGSEDGTIKVWD