Input parameters:

  Query = CmaCh15G000070 (Len=513)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh15G000070, Len=513):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSTLEIEARDVIKIVLQFCKENSLHQTFQTLQNECQVSLNTVDSIETFVADVNSGRWDAILPQVSQLKLPRNILEDLYEQ 80  
WD40-rpts                                                           (__________________________

Query       81 IVLEMIELRELDTARAILRQTQVMGVMKQEQPERYLRLEHLLVRTYFDPNEAYQDSTKEKCRAQIAQALAAEVTVVAPSR 160 
WD40-rpts      __________________WD 1____________________________________________)   (_________

Query      161 LMALIGQSLKWQQHQGLLPPGTQFDLFRGTAAMKQDVEDVYPTTLSHTIKFGTKSHAESARFSPDGQFLVSCSVDGFIEV 240 
WD40-rpts      _____________WD 2_____________________)(___________________WD 3_________________

Query      241 WDYISGKLKKDLQYQADETFMMHDDPVLCVDFSRDSEMIASGSQDGKIKVWRVRTGQCLRRLERAHSQGVTSVVFSRDGT 320 
WD40-rpts      _)           (_________________WD 4________________)   (_________________WD 5___

Query      321 QLLSASFDTTARIHGLKSGKLLKEFRGHSSYVNDAVFTNDGARVITASSDCTVKVWDVKTTDCLHTFKPPPPLRGGDASV 400 
WD40-rpts      ______________)   (_________________WD 6________________)         (_____________

Query      401 NSVHIFSKNADLIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCIGEDRNMYCFSHQSGKLEHLM 480 
WD40-rpts      ____WD 7_________________)(___________________WD 8___________________)   (______

Query      481 KVHEKDVIGVSHHPHRNLVATYSEDSTMKLWRP 513 
WD40-rpts      ___________WD 9________________) 

9 WD40-repeats found in QUERY=CmaCh15G000070 (Len=513):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    54-147      4.51  301.07  0.00544       15.0%     35.35
  WD 2:  Seg  5   151-199      5.35  335.65  0.00186       17.5%     39.29
  WD 3:  Seg  9   200-242      8.87  481.10  2.0e-05       45.0%     52.31
  WD 4:  Seg 14   254-292      9.63  512.41  7.7e-06       40.0%     46.69
  WD 5:  Seg 17   296-335      9.36  501.31  1.1e-05       50.0%     54.41
  WD 6:  Seg 21   339-377     10.59  551.97  2.3e-06       42.5%     56.50
  WD 7:  Seg 26   387-426      6.70  391.42  0.00033       22.5%     36.20
  WD 8:  Seg 29   427-470      6.17  369.73  0.00065       12.5%     51.38
  WD 9:  Seg 33   474-512      9.40  502.79  1.0e-05       30.0%     52.61

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   54-147    SG----R---WDAILPQVSQLKLPRNILEDLYEQIVLEMIELRELDTARAILRQTQVMGVMKQEQ---PERYLRLEHLLVRTY-FDPNEAY--QDSTKEKCRAQIAQ
   WD 2  151-199    -A----E---VTVVA-------------------------------------------------PSRLMALIGQSLKWQQHQG-LLPPGTQFDLFRGTAAMKQDVED
   WD 3  200-242    VY----PTTLSHTIK-------------------------------------------------F--------GTKSHAESAR-FSPDGQF--LVSCSVDGFIEVWD
   WD 4  254-292    -Y----Q---ADETF-------------------------------------------------M--------MHDDPVLCVD-FSRDSEM--IASGSQDGKIKVWR
   WD 5  296-335    -G----Q---CLRRL-------------------------------------------------E-------RAHSQGVTSVV-FSRDGTQ--LLSASFDTTARIHG
   WD 6  339-377    -G----K---LLKEF-------------------------------------------------R--------GHSSYVNDAV-FTNDGAR--VITASSDCTVKVWD
   WD 7  387-426    -F----K---PPPPL-------------------------------------------------R--------GGDASVNSVHIFSKNADL--IVVCNKTSSIYIMT
   WD 8  427-470    LQGQVVK---SFSSG-------------------------------------------------K--------REGGDFVAAC-VSPKGEW--IYCIGEDRNMYCFS
   WD 9  474-512    -G----K---LEHLM-------------------------------------------------K--------VHEKDVIGVS-HHPHRNL--VATYSEDSTMKLWR

   WD40 Template    TG----E---CLRTL-------------------------------------------------S--------GHTSGVTSVS-FSPDGKR--LVSGSEDGTIKVWD