Input parameters:

  Query = eif3b (Len=814)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (eif3b, Len=814):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MQDAENVAVPEAAEERAEPGQQQPAAEPPPAEGLLRPAGPGAPEAAGTEASSEEVGIAEAGPESEVRTEPAAEAEAASGP 80  
WD40-rpts                                                                                      

Query       81 SESPSPPAAEELPGSHAEPPVPAQGEAPGEQARDERSDSRAQAVSEDAGGNEGRAAEAEPRALENGDADEPSFSDPEDFV 160 
WD40-rpts                                                                                      

Query      161 DDVSEEELLGDVLKDRPQEADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASP 240 
WD40-rpts                                                                                      

Query      241 AHAVDAVKNADGYKLDKQHTFRVNLFTDFDKYMTISDEWDIPEKQPFKDLGNLRYWLEEAECRDQYSVIFESGDRTSIFW 320 
WD40-rpts                                                                                      

Query      321 NDVKDPVSIEERARWTETYVRWSPKGTYLATFHQRGIALWGGEKFKQIQRFSHQGVQLIDFSPCERYLVTFSPLMDTQDD 400 
WD40-rpts         (________________WD 1________________)(_____________________WD 2_____________

Query      401 PQAIIIWDILTGHKKRGFHCESSAHWPIFKWSHDGKFFARMTLDTLSIYETPSMGLLDKKSLKISGIKDFSWSPGGNIIA 480 
WD40-rpts      _______)   (_________________WD 3________________)   (___________________WD 4___

Query      481 FWVPEDKDIPARVTLMQLPTRQEIRVRNLFNVVDCKLHWQKNGDYLCVKVDRTPKGTQGVVTNFEIFRMREKQVPVDVVE 560 
WD40-rpts      ________________)                                                      (________

Query      561 MKETIIAFAWEPNGSKFAVLHGEAPRISVSFYHVKNNGKIELIKMFDKQQANTIFWSPQGQFVVLAGLRSMNGALAFVDT 640 
WD40-rpts      __________WD 5__________________)  (___________________WD 6___________________)(

Query      641 SDCTVMNIAEHYMASDVEWDPTGRYVVTSVSWWSHKVDNAYWLWTFQGRLLQKNNKDRFCQLLWRPRPPTLLSQEQIKQI 720 
WD40-rpts      ____________________WD 7____________________)                                   

Query      721 KKDLKKYSKIFEQKDRLSQSKASKELVERRRTMMEDFRKYRKMAQELYMEQKNERLELRGGVDTDELDSNVDDWEEETIE 800 
WD40-rpts                                                                                      

Query      801 FFVTEEIIPLGNQE 814 
WD40-rpts                    

7 WD40-repeats found in QUERY=eif3b (Len=814):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  7   324-361      4.08  283.35  0.00942       22.5%     51.78
  WD 2:  Seg 11   362-408      5.37  336.38  0.00182       27.5%     49.17
  WD 3:  Seg 15   412-450      3.13  243.92  0.03168       22.5%     49.04
  WD 4:  Seg 19   454-497      4.11  284.37  0.00913       20.0%     37.80
  WD 5:  Seg 27   552-593      3.39  254.79  0.02271        5.0%     56.46
  WD 6:  Seg 31   596-639      4.36  294.57  0.00666       17.5%     48.07
  WD 7:  Seg 35   640-685      4.92  317.73  0.00325       20.0%     54.57

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  324-361    -KDPVSIEE-RARWTE-TYVRWSPKGTYLA-----T---FH-------Q------RG----IALWG
   WD 2  362-408    GEKFKQIQR-FSHQGV-QLIDFSPCERYLV-----T---FSPLMDTQDD------PQ---AIIIWD
   WD 3  412-450    -GHKKRGFH-CESSAHWPIFKWSHDGKFFA-----R---MT-------L------D----TLSIYE
   WD 4  454-497    -MGLLDKKS-LKISGI-KDFSWSPGGNIIAFWVPED---KD-------I------PA---RVTLMQ
   WD 5  552-593    -KQVPVDVV-EMKETI-IAFAWEPNGSKFA-----V---LH-------G------EAPRISVSFYH
   WD 6  596-639    NNGKIELIKMFDKQQA-NTIFWSPQGQFVV-----LAGLRS-------M------NG---ALAFVD
   WD 7  640-685    TSDCTVMNI-AEHYMA-SDVEWDPTGRYVV-----T---SV-------SWWSHKVDN---AYWLWT

   WD40 Template    TGECLRTLS-GHTSGV-TSVSFSPDGKRLV-----S---GS-------E------DG---TIKVWD