Input parameters:

  Query = CsaV3_3G022910 (Len=350)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_3G022910, Len=350):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAKYALGSEPVVGLLTPSKKKEYRVTNRLQEGKRPLYAVVFNFIDSRYFNVFATVGGNRITVYQCLEGGVIAVLQSYVDE 80  
WD40-rpts                            (__________________WD 1__________________)   (____________

Query       81 DKDESFYTVSWAYNVDGSPFVVAGGINGIIRVIDAGSEKIYKSFVGHGDSINEIRTQPLKPSLVISASKDESVRLWNVHT 160 
WD40-rpts      _________WD 2____________________)   (_________________WD 3_________________)   

Query      161 GICILVFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS 240 
WD40-rpts      (___________________WD 4__________________)                          (__________

Query      241 NYVDCSRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTVDILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWEL 320 
WD40-rpts      ______WD 5_______________)            (__________________WD 6_________________) 

Query      321 QSSPQFSSQGCLMPSRSLPSDRQPCPLMEV 350 
WD40-rpts                                    

6 WD40-repeats found in QUERY=CsaV3_3G022910 (Len=350):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    23-64       5.95  360.31  0.00087       15.0%     51.60
  WD 2:  Seg  6    68-114      6.47  381.99  0.00044       27.5%     56.66
  WD 3:  Seg 10   118-157      8.45  463.84  3.5e-05       17.5%     54.75
  WD 4:  Seg 14   161-203      8.05  447.05  5.9e-05       40.0%     57.56
  WD 5:  Seg 19   230-266      5.71  350.51  0.00118       22.5%     45.82
  WD 6:  Seg 23   279-319      6.86  398.09  0.00027       22.5%     50.31

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   23-64     YRVTNRLQ---EGKRP-------LYAVVFNF-IDS--RYFNVFATVGGNRITVYQ
   WD 2   68-114    GGVIAVLQ---SYVDEDKDESFYTVSWAYNV-DGS-PF---VVAGGINGIIRVID
   WD 3  118-157    EKIYKSFV---GHGDS-------INEIRTQPLKPS--L---VISASKDESVRLWN
   WD 4  161-203    GICILVFAGAGGHRNE-------VLSVDFHPSDIY--R---IASCGMDNTVKIWS
   WD 5  230-266    QFPVFIAS---VHSNY-------VDCSRWL---GD--F---ILSKSVDNEIVLWE
   WD 6  279-319    VDILQKYP---VPECD-------IWFIKFSC-DFHYNA---AAIGNREGKIFVWE

   WD40 Template    GECLRTLS---GHTSG-------VTSVSFSP-DGK--R---LVSGSEDGTIKVWD