Input parameters:

  Query = CmaCh18G003250 (Len=461)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh18G003250, Len=461):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSNVGETMALAVCSDKNMGSGITIWDPKTGETLLHIPTCASPSYGLISLRNEFLVASQTRKEGSVGGGSMFVWSLSKPQS 80  
WD40-rpts                                   (____________________WD 1___________________)(_____

Query       81 PLRSYPLEPIGPLASTKDGVYLAGGAHSGNIHLWEVGSGKLLKLWSGHHKPIKFILFSWDDSFLITGSADGMIFVWSMIS 160 
WD40-rpts      _____________WD 2_________________)   (_________________WD 3________________)   

Query      161 LLDVELVGSAQPILYSLMEHKSSLTGLITMSGYSMSMIISSSLDGSLKFWDLMSGMIRGTQAHVEGITEIVLHPTEQFLF 240 
WD40-rpts            (____________________WD 4___________________)  (_________________WD 5_____

Query      241 SGTVDGKIFASRLEFGLDNCITIKESQLFASTGHKGAITALAFSLMDLVSASEDCTVCIWDINSQMIIQKLEHKKGRITN 320 
WD40-rpts      ___________)            (________________WD 6_______________)   (_______________

Query      321 LVAVPRSSLLISTSNRKRVLKQFDKYPQPANLSTSTIPLFPSSRPLGENPNLIGFTSAGSLNQQIFDMKTEGTSAAIQMK 400 
WD40-rpts      __WD 7_________________)   (_________________WD 8_________________)             

Query      401 VDTRLQSRMWASRMTKQVMEMNNHLQSQLLDMMQTRLFPKKRKDQRDRVARTREKHPLSFH 461 
WD40-rpts      (_______________________WD 9______________________)          

9 WD40-repeats found in QUERY=CmaCh18G003250 (Len=461):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    30-74       6.86  398.03  0.00027       20.0%     54.06
  WD 2:  Seg  7    75-115      8.21  453.76  4.8e-05       20.0%     50.41
  WD 3:  Seg 10   119-157     10.10  531.84  4.2e-06       40.0%     56.93
  WD 4:  Seg 15   167-211      8.11  449.59  5.4e-05       32.5%     53.73
  WD 5:  Seg 19   214-252      8.89  481.93  2.0e-05       27.5%     54.76
  WD 6:  Seg 23   265-301      7.52  425.09  0.00012       37.5%     47.85
  WD 7:  Seg 27   305-344      7.33  417.59  0.00015       20.0%     56.05
  WD 8:  Seg 31   348-387      5.98  361.57  0.00083        7.5%     33.55
  WD 9:  Seg 35   401-451      3.82  272.51  0.01316       10.0%     22.19

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   30-74     -G---E-TLLHIPTCASPSYGLISLR--NE-----------FLVA-SQTRKEGSVGGGSM-FVWS
   WD 2   75-115    LS---KPQSPLRSYPLEPIGPLASTK--DG-----------VYLA-GGAH------SGNI-HLWE
   WD 3  119-157    -G---K-LLKLWSGHHKPIKFILFSW--DD-----------SFLI-TGSA------DGMI-FVWS
   WD 4  167-211    VGSAQP-ILYSLMEHKSSLTGLITMSGYSM-----------SMII-SSSL------DGSL-KFWD
   WD 5  214-252    -S---G-MIRGTQAHVEGITEIVLHP--TE-----------QFLF-SGTV------DGKI-FASR
   WD 6  265-301    -E---S-QLFASTGHKGAITALAFSL--MD-------------LV-SASE------DCTV-CIWD
   WD 7  305-344    -Q---M-IIQKLEHKKGRITNLVAVP--RS-----------SLLI-STSN------RKRVLKQFD
   WD 8  348-387    -Q---P-ANLSTSTIPLFPSSRPLGE--NP-----------NLIGFTSAG------SLNQ-QIFD
   WD 9  401-451    VD---T-RLQSRMWASRMTKQVMEMN--NHLQSQLLDMMQTRLFP-KKRK------DQRD-RVAR

   WD40 Template    TG---E-CLRTLSGHTSGVTSVSFSP--DG-----------KRLV-SGSE------DGTI-KVWD