Input parameters:

  Query = CsaV3_5G004880 (Len=454)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_5G004880, Len=454):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEFTETYKQTGPCCFSPNSRFIAVAVDYRLVVRDTLSFKVVHLFSCLDKISYIEWALDSEYILCGLYKKPMIQAWSLTQP 80  
WD40-rpts      (______________WD 1______________)  (_________________WD 2_________________)   (

Query       81 EWTCKIDDGPAGIAYARWSPDSRHILTTSDFQLRLTVWSLVNTACVHVQWPKHTSKGVSFTKDGKFAAVCTRKDCKDYIN 160 
WD40-rpts      _________________WD 3_________________)  (_________________WD 4________________)

Query      161 LISCHTWEIMGVFAVDTLDLADLEWSPDDSSIVVWDSPLDYKVLIYSPDGRCLFKYQAYESGLGVKSVSWSPCGQFLAVG 240 
WD40-rpts            (__________________WD 5_________________)  (__________________WD 6________

Query      241 SYDQMLRVLNHLTWKTFAEFIHVSTVRGPSCTAIFKEVDEPLQLNMSELCLNDDSEDSTEGHFRVRYEVTEVPITLPFQK 320 
WD40-rpts      _________)                 (________________WD 7_______________)              (_

Query      321 PLADKPNPKQGIGLMLWSKDSQYICTRNDSMPTALWIWDIHHLELAAILVQKDPIRAAAWDPTCTRLILCTGSPHLYMWT 400 
WD40-rpts      _________________WD 8_________________)(__________________WD 9_________________)

Query      401 PAGAYCVNVPLSEFAITDLKWNSDGSCVLLKDKEAFCCAAVPVLPESSDYSSEE 454 
WD40-rpts        (_________________WD10________________)             

10 WD40-repeats found in QUERY=CsaV3_5G004880 (Len=454):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-34       5.08  324.43  0.00264       15.0%     40.83
  WD 2:  Seg  4    37-76       5.87  356.95  0.00096       12.5%     56.20
  WD 3:  Seg  8    80-119      7.25  414.02  0.00016       20.0%     59.00
  WD 4:  Seg 12   122-160      6.05  364.43  0.00076       15.0%     51.89
  WD 5:  Seg 16   167-207      6.99  403.30  0.00023       17.5%     45.59
  WD 6:  Seg 20   210-250      8.11  449.57  5.4e-05       42.5%     57.92
  WD 7:  Seg 25   268-304      5.34  335.04  0.00190       15.0%     18.20
  WD 8:  Seg 28   319-359      6.56  385.58  0.00040       15.0%     39.02
  WD 9:  Seg 31   360-400      7.45  422.26  0.00013       12.5%     57.17
  WD10:  Seg 35   403-441      6.41  379.50  0.00048       10.0%     54.72

Multiple sequence alignment of 10 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-34     ------MEFTETYK--QTGPCCFSPNSRFIA--VAV--D--YR-LVVRD
   WD 2   37-76     -SFK-VVHLFSCLD--KISYIEWALDSEYIL--CGLYKK--PM-IQAWS
   WD 3   80-119    -PEW-TCKIDDGPA--GIAYARWSPDSRHIL--TTS-DF--QLRLTVWS
   WD 4  122-160    -NTA-CVHVQWPKH--TSKGVSFTKDGKFAA--VCT-RK--DC-KDYIN
   WD 5  167-207    -WEI-MGVFAVDTL--DLADLEWSPDDSSIVVWDSP-LD--YK-VLIYS
   WD 6  210-250    -GRC-LFKYQAYESGLGVKSVSWSPCGQFLA--VGS-YD--QM-LRVLN
   WD 7  268-304    GPSC----TAIFKE--VDEPLQLNMSELCLN--DDS-ED--ST-EGHFR
   WD 8  319-359    -QKP-LADKPNPKQ--GIGLMLWSKDSQYIC--TRN-DSMPTA-LWIWD
   WD 9  360-400    IHHLELAAILVQKD--PIRAAAWDPTCTRLI--LCT-GS--PH-LYMWT
   WD10  403-441    -GAY-CVNVPLSEF--AITDLKWNSDGSCVL--LKD-KE--AF-CCAAV

   WD40 Template    TGEC-LRTLSGHTS--GVTSVSFSPDGKRLV--SGS-ED--GT-IKVWD