WDRR: WD40 Repeat Recognition
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| JobID: ZM39T1659519863 Submitted: 2022-08-03 17:44:23 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79728825 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CsaV3_6G043670 (Len=596) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CsaV3_6G043670, Len=596): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MTSITSVELNYLVFRYLQESGFIHSAFALGYEAGINKCSIDGNLVPPGALVTVVQKGLQYLEMEANLSNNDTDIDEDFSF 80
WD40-rpts
Query 81 LQPLDLITKDVHELRQIIKDKRKSLVKDKEKDKDLDKELESERGRVREKERRESEVERGRAREKERLEREKERVEREKER 160
WD40-rpts
Query 161 LEREKERLEREKEHEKDRDKIEKDKEREKQHENFTDRDMVMDQDEKVHANQGENGVFGGPEPMDISTTSTSQSCEISSSD 240
WD40-rpts (________________WD 1_______________)(_
Query 241 VTILQGHTSEVCACAWNPTGSLLASGSGDSTARIWPIADGSSRSGGQSGPLNVLVLKHVKGRTNEKSKDVTTLDWNGDGT 320
WD40-rpts _______________WD 2________________) (_______________WD 3_
Query 321 LLATGSYDGQARIWSTNGELRSTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKAEEWKQQFEFHSGPTLDVDWRN 400
WD40-rpts ______________) (_________________WD 4________________) (________________WD 5
Query 401 NVSFATSSTDNMIYVCKIGETRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDITAKIWSMKQDKYVYDLREHSKEIYTIR 480
WD40-rpts ________________) (_________________WD 6________________) (_________________
Query 481 WSPTGPGTNNPNQQLVLASASFDSTVKLWDVELGKLICSLNGHREPVYSVAFSPNGEYLASGSLDKSMHIWSLKEGKIVK 560
WD40-rpts ____WD 7_____________________) (_________________WD 8________________) (____
Query 561 TYTGNGGIFEVCWNKEGDKIAACFANNTVCVLDFRM 596
WD40-rpts ____________WD 9________________)
 9 WD40-repeats found in QUERY=CsaV3_6G043670 (Len=596): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 2 202-238 5.07 324.26 0.00265 10.0% 36.92 WD 2: Seg 5 239-276 9.65 513.33 7.5e-06 37.5% 49.30 WD 3: Seg 10 300-335 8.53 467.21 3.1e-05 27.5% 46.38 WD 4: Seg 13 338-376 10.10 531.97 4.2e-06 40.0% 52.72 WD 5: Seg 17 380-417 6.93 400.92 0.00025 17.5% 51.58 WD 6: Seg 21 421-459 9.90 523.75 5.4e-06 35.0% 57.18 WD 7: Seg 25 463-510 8.00 444.97 6.3e-05 32.5% 57.82 WD 8: Seg 29 514-552 10.42 545.03 2.8e-06 42.5% 56.49 WD 9: Seg 33 556-593 7.74 434.56 8.7e-05 22.5% 55.57Multiple sequence alignment of 9 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 202-238 DQD---EKVHANQGENGVFGGPEPM---------DISTTSTSQSCEISS WD 2 239-276 --SDVTILQGHTSEVCACAWNPTGS---------LLASGSGDSTARIWP WD 3 300-335 KG----RTNEKSKDVTTLDWNGDGT---------LLATGSYDGQARIWS WD 4 338-376 -GELRSTLSKHKGPIFSLKWNKKGD---------YLLTGSCDKTAIVWD WD 5 380-417 -EEWKQQFEFHSGPTLDVDWRNNVS----------FATSSTDNMIYVCK WD 6 421-459 -TRPIKTFAGHQGEVNCVKWDPTGS---------LLASCSDDITAKIWS WD 7 463-510 -DKYVYDLREHSKEIYTIRWSPTGPGTNNPNQQLVLASASFDSTVKLWD WD 8 514-552 -GKLICSLNGHREPVYSVAFSPNGE---------YLASGSLDKSMHIWS WD 9 556-593 -GKIVKTYTGN-GGIFEVCWNKEGD---------KIAACFANNTVCVLD WD40 Template TGECLRTLSGHTSGVTSVSFSPDGK---------RLVSGSEDGTIKVWD |
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