Input parameters:

  Query = CmaCh01G003160 (Len=400)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh01G003160, Len=400):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MESIDMDVEEPVNADSSVDSSSFKRFGLKNAIQTNFGDDYVFHIAPNGDWTSMAVSLSSNVVKLYSPVTGQYYGECRGHI 80  
WD40-rpts                                        (_____________WD 1_____________)   (__________

Query       81 GTINQISFSMPSTTPHVLHSCSSDGTIRSWDVRNFQQVSSISAGPSQEIFSFAYGGSSVNLLAAGCKSQILFWDWRNRKQ 160 
WD40-rpts      ________WD 2__________________)    (_________________WD 3________________)(_____

Query      161 VACLEDSHVEDVTQVHFIPGHQAKLASASVDGLVCIFDTNGDIDDDEHMDSVINVGTSVGKIGFFGENYRKLWCLTHIET 240 
WD40-rpts      ______________WD 4___________________)                           (______________

Query      241 LSFMQMGYGSLWDWTDGRNEADITNARTLASNSWAMGHVDYLVDCHYSSEGDRLWVLGGTNDGTVGYFPVDHHKGKNAIE 320 
WD40-rpts      ___WD 5_________________)   (__________________WD 6_________________)          (

Query      321 SPDVVLEGGHIGIVRSVLPMTNTSGGFSRSQGVFGWTGGEDGRLCCWSSDDSCETNRSWISSTLVIKSPGTRRKHRHHPY 400 
WD40-rpts      ______________________WD 7_____________________)                                

7 WD40-repeats found in QUERY=CmaCh01G003160 (Len=400):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    35-66       5.77  352.93  0.00109        7.5%     46.30
  WD 2:  Seg  6    70-111      8.48  464.96  3.4e-05       37.5%     59.55
  WD 3:  Seg 10   116-154      7.71  433.03  9.1e-05       15.0%     53.06
  WD 4:  Seg 14   155-198      7.24  413.61  0.00017       30.0%     53.25
  WD 5:  Seg 20   226-265      4.56  302.98  0.00513        5.0%     34.77
  WD 6:  Seg 24   269-309      8.02  446.12  6.0e-05       25.0%     47.82
  WD 7:  Seg 28   320-368      7.93  442.19  6.8e-05       27.5%     40.98

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   35-66     -----------NFGDDYVFHIAPNGD---------W---T-SM--AVSLSSNVVKLYS
   WD 2   70-111    -G---QYYGECRGHIGTINQISFSMP---------STTPH-VL--HSCSSDGTIRSWD
   WD 3  116-154    -Q---QVSSISAGPSQEIFSFAYGGS---------S---V-NL--LAAGCKSQILFWD
   WD 4  155-198    WRNRKQVACLEDSHVEDVTQVHFIPG---------H---QAKL--ASASVDGLVCIFD
   WD 5  226-265    GE---NYRKLWCLTHIETLSFMQMGY---------G---S-LW--DWTDGRNEADITN
   WD 6  269-309    -L---ASNSWAMGHVDYLVDCHYSSE---------G---D-RLWVLGGTNDGTVGYFP
   WD 7  320-368    ES---PDVVLEGGHIGIVRSVLPMTNTSGGFSRSQG---V-FG--WTGGEDGRLCCWS

   WD40 Template    TG---ECLRTLSGHTSGVTSVSFSPD---------G---K-RL--VSGSEDGTIKVWD