Input parameters:

  Query = CmaCh11G006940 (Len=513)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh11G006940, Len=513):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDSSQSQQQQQQQPQQQQPQLQQQPVVKKKETRGRKPKPKEEKKDEQQAKKMKAQQQPSVDERYTQWKSLVPVLYDWFAN 80  
WD40-rpts                                                                                      

Query       81 HNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKYKTIIHP 160 
WD40-rpts                                                     (____________________________WD 1

Query      161 GEVNRIRELPQNARIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQENAEFALAMCPTEPYVLSGGKDKLV 240 
WD40-rpts      ____________________________)               (_________________WD 2______________

Query      241 VLWSIQDHITTAASDAAASKSPGSGGSIIKKAGEANDKTAEGPSIGPRGVYHGHEDTVEDVTFCPSNAQEFCSVGDDSCL 320 
WD40-rpts      ___)(________________WD 3_______________)   (_________________WD 4______________

Query      321 ILWDARTGTSPAVKVEKAHNADLHCVDWNPHDDNLIITGSADNSIRLFDRRNLTSNGVGSPIYKFEGHKAAVLCVQWSPD 400 
WD40-rpts      ___)     (_________________WD 5_________________)         (_________________WD 6

Query      401 KSSVFGSSAEDGLLNIWDYDKVGKKTERATRTPAAPPGLFFQHAGHRDKVVDFHWNASDPWTLVSVSDDCDTTGGGGTLQ 480 
WD40-rpts      _________________)(______________________________WD 7___________________________

Query      481 IWRMSDLIYRPEDEVLAELEKFKSHVIECAAKP 513 
WD40-rpts      __)                              

7 WD40-repeats found in QUERY=CmaCh11G006940 (Len=513):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4   128-189      5.16  327.93  0.00237       15.0%     54.56
  WD 2:  Seg  8   205-244      6.63  388.34  0.00036       20.0%     53.51
  WD 3:  Seg 12   245-281      5.29  333.30  0.00200       10.0%     37.25
  WD 4:  Seg 16   285-324      7.55  426.68  0.00011       25.0%     55.27
  WD 5:  Seg 20   330-369      7.72  433.47  8.9e-05       22.5%     53.78
  WD 6:  Seg 24   379-418      8.16  451.72  5.1e-05       35.0%     55.02
  WD 7:  Seg 28   419-483      4.78  312.03  0.00388       30.0%     54.28

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  128-189    VVKPRVAAAEHISQFNEEARSPFVKKYKTIIHP-GEVNRIRELP-QNARIVATHTDS-------PDVLIWD
   WD 2  205-244    -SR---------------------PDLILTGHQENAEFALAMCP-TEPY-VLSGGKD-------KLVVLWS
   WD 3  245-281    IQD-----------------------HITTAAS-DAAASKSPGS-GGSI-IKKAG-E-------ANDKTAE
   WD 4  285-324    -IG---------------------PRGVYHGHE-DTVEDVTFCPSNAQE-FCSVGDD-------SCLILWD
   WD 5  330-369    -SP---------------------AVKVEKAHN-ADLHCVDWNPHDDNL-IITGSAD-------NSIRLFD
   WD 6  379-418    -GS---------------------PIYKFEGHK-AAVLCVQWSP-DKSSVFGSSAED-------GLLNIWD
   WD 7  419-483    YDK----VGKKTERATRTPAAPPGLFFQHAGHR-DKVVDFHWNASDPWT-LVSVSDDCDTTGGGGTLQIWR

   WD40 Template    TGE---------------------CLRTLSGHT-SGVTSVSFSP-DGKR-LVSGSED-------GTIKVWD