Input parameters:

  Query = CmaCh19G007390 (Len=394)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh19G007390, Len=394):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAEEQAGGVDEVVEEFAIWKKNSPYLYDLLISHSLEWPSLTVDWVPSAPFPHQANPSLAVHKLVLGTHTSEDVPNYLMVA 80  
WD40-rpts                                                                                      

Query       81 DSILPVKASETRIDISRENPIMPKIEITQKIRVEGEVNRARCMPQNVQIVGAKTSGCEVYVFNCAKQGAKAQGAECDPDL 160 
WD40-rpts                                                                                 (____

Query      161 RLRGHDKEGYGLSWSPFKEGYLLSGSNDQKICLWDVSSMADKNVLDAMHVYEAHESVVGDVSWHLKNENLFGSVGDDCLL 240 
WD40-rpts      _____________WD 1_________________)            (________________WD 2____________

Query      241 VIWDLRTNKSVDSVRAHEEEVNYVSFNPYNEWIVATASSDTTVGLFDLRKLAEPLHVLSSHTEGVFQVEWDPNHETVLAS 320 
WD40-rpts      ___)   (_________________WD 3_________________)    (_________________WD 4_______

Query      321 SGDDRRLMVWDLNSIGSEQDGEAEDGPPELLFSHGGHKAKISDFSWNSHEPWVISSVAEDNSVQVWQMAKSIYR 394 
WD40-rpts      __________)(_________________________WD 5_________________________)       

5 WD40-repeats found in QUERY=CmaCh19G007390 (Len=394):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  9   156-195      6.53  384.31  0.00041       35.0%     52.71
  WD 2:  Seg 13   208-244      6.37  377.96  0.00050       25.0%     47.03
  WD 3:  Seg 16   248-287      7.21  412.66  0.00017       25.0%     54.14
  WD 4:  Seg 20   292-331      8.03  446.49  6.0e-05       40.0%     51.66
  WD 5:  Seg 24   332-387      5.72  350.79  0.00117       25.0%     56.88

Multiple sequence alignment of 5 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  156-195    -C---------------DPDLRLRGHDKEGYGLSWSPFKEG-Y-L-LSGSNDQKICLWD
   WD 2  208-244    -------------------MHVYEAHESVVGDVSWHL-KNE-N-LFGSVGDDCLLVIWD
   WD 3  248-287    -N---------------KSVDSVRAHEEEVNYVSFNP-YNEWI-V-ATASSDTTVGLFD
   WD 4  292-331    -A---------------EPLHVLSSHTEGVFQVEWDP-NHE-TVL-ASSGDDRRLMVWD
   WD 5  332-387    LNSIGSEQDGEAEDGPPELLFSHGGHKAKISDFSWNSHEPW-V-I-SSVAEDNSVQVWQ

   WD40 Template    TG---------------ECLRTLSGHTSGVTSVSFSP-DGK-R-L-VSGSEDGTIKVWD