Input parameters:

  Query = CmaCh10G005830 (Len=370)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh10G005830, Len=370):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDKKKVAIPLVCHGHSRPVVDLSYSPVTPDGFFLISASKDSNPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAATGS 80  
WD40-rpts            (__________________WD 1_________________)   (_________________WD 2________

Query       81 ADFSAKVWDALTGHVLHSFEHKHIVRACAFSEDTHLLLTGGLEKVLRIYDLNRPDAPPREVDKSPGSVRTVTWLHSDQTI 160 
WD40-rpts      ________)   (________________WD 3________________)(___________________WD 4______

Query      161 LSSCTDMGGVRLWDVRSGQIVQTLETKSSVTSAEVSQDGRYITTADGSTVKFWDANHFGLVKSYNMPCNVESASLEPKYG 240 
WD40-rpts      _____________)   (________________WD 5_______________)   (_________________WD 6_

Query      241 MKFIAGGEDMWIHVFDFHTGDEIACNKGHHGPVHCLRFAPGGESYASGSEDGTIRIWQTGPLTHDDSDEALVNGSMGKVK 320 
WD40-rpts      _______________)   (_________________WD 7________________)(_____________________

Query      321 VSADEVSRKIEGFSIADEGKFREKEKIFNHCQCSSKDHVEEQLHEEFLLV 370 
WD40-rpts      WD 8____________________)                         

8 WD40-repeats found in QUERY=CmaCh10G005830 (Len=370):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     7-47       7.78  436.00  8.3e-05       30.0%     52.57
  WD 2:  Seg  5    51-89       9.92  524.28  5.3e-06       35.0%     55.39
  WD 3:  Seg  9    93-130      7.91  441.54  7.0e-05       25.0%     55.78
  WD 4:  Seg 13   131-174      7.01  404.12  0.00022       22.5%     52.08
  WD 5:  Seg 17   178-214      7.24  413.86  0.00016       35.0%     53.30
  WD 6:  Seg 21   218-256      8.35  459.40  4.0e-05       17.5%     56.56
  WD 7:  Seg 25   260-298     10.28  539.44  3.3e-06       40.0%     56.91
  WD 8:  Seg 29   299-345      3.32  251.99  0.02474       20.0%     43.16

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    7-47     --A---IPLVCHGHSRPVVDLSY-SPVTPDGFFLISA------------SKDSNPMLRN
   WD 2   51-89     -GD---WIGTFEGHKGAVWSCCL-DT---NALRAATG------------SADFSAKVWD
   WD 3   93-130    -GH---VLHSF-EHKHIVRACAF-SE---DTHLLLTG------------GLEKVLRIYD
   WD 4  131-174    LNRPDAPPREVDKSPGSVRTVTWLHS---DQTILSSC------------TDMGGVRLWD
   WD 5  178-214    -GQ---IVQTLETKSS-VTSAEV-SQ---DGRYITTA------------D-GSTVKFWD
   WD 6  218-256    -FG---LVKSYNMPCNVESASLE-PK---YGMKFIAG------------GEDMWIHVFD
   WD 7  260-298    -GD---EIACNKGHHGPVHCLRF-AP---GGESYASG------------SEDGTIRIWQ
   WD 8  299-345    TGP---LT-----HDDSDEALVN-GS---MGKVKVSADEVSRKIEGFSIADEGKFREKE

   WD40 Template    TGE---CLRTLSGHTSGVTSVSF-SP---DGKRLVSG------------SEDGTIKVWD