Input parameters:

  Query = CmaCh11G003020 (Len=327)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh11G003020, Len=327):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAEGLVLRGTMRAHTDMVTAIATPVDNSDMIVTSSRDKSIILWRLTKEEKTYGVPQRRLNGHSHFVQDVVLSSDGQFALS 80  
WD40-rpts      (___________________WD 1___________________)        (_________________WD 2______

Query       81 GSWDGELRLWDLATGVTSRRFVGHSKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQDGDAHSDWVSCVRFSPN 160 
WD40-rpts      __________)   (_________________WD 3________________)     (__________________WD 

Query      161 TLLPTIVSASWDKTVKVWNLTNCKLRVTLAGHAGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKKLYSLDAGSIIHAL 240 
WD40-rpts      4_________________)   (_________________WD 5________________)   (_______________

Query      241 CFSPNRYWLCAATESSIKIWDLESKSIVEDLKVDLKTEAEKTDDTHAATANKIKVIYCTSLSWSADGSTLFSGYTDGVIR 320 
WD40-rpts      _WD 6_______________)                       (_________________WD 7______________

Query      321 VWGIGRY 327 
WD40-rpts      __)    

7 WD40-repeats found in QUERY=CmaCh11G003020 (Len=327):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-44       7.93  442.26  6.8e-05       30.0%     54.90
  WD 2:  Seg  5    53-91      10.05  529.84  4.5e-06       42.5%     53.01
  WD 3:  Seg  9    95-133     10.57  551.10  2.3e-06       45.0%     56.89
  WD 4:  Seg 13   139-179      8.38  460.71  3.8e-05       35.0%     52.83
  WD 5:  Seg 17   183-221     10.36  542.66  3.0e-06       42.5%     54.93
  WD 6:  Seg 21   225-261      6.17  369.71  0.00065       30.0%     52.80
  WD 7:  Seg 25   285-323      7.47  423.23  0.00012       35.0%     43.45

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-44     MAEGLVLRGTMRAHTDMVTAIATPVDN-SDMIVTSSRDKSIILWR
   WD 2   53-91     -GV---PQRRLNGHSHFVQDVVLSSDG--QFALSGSWDGELRLWD
   WD 3   95-133    -GV---TSRRFVGHSKDVLSVAFSIDN--RQIVSASRDRTIKLWN
   WD 4  139-179    -KY---TIQDGDAHSDWVSCVRFSPNTLLPTIVSASWDKTVKVWN
   WD 5  183-221    -CK---LRVTLAGHAGYVNTVAVSPDG--SLCASGGKDGVILLWD
   WD 6  225-261    -GK---KLYSLDAG-SIIHALCFSPNR--YWLCAAT-ESSIKIWD
   WD 7  285-323    -TH---AATANKIKVIYCTSLSWSADG--STLFSGYTDGVIRVWG

   WD40 Template    TGE---CLRTLSGHTSGVTSVSFSPDG--KRLVSGSEDGTIKVWD