Input parameters:

  Query = CmaCh04G028550 (Len=427)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh04G028550, Len=427):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MLIRQSAMLPLSDLYCLAVKTFRGVLKPEMASTQESSEIGASGSIDQKEQNGKSELELHSVFWNQDYSCFAAGTSCGFRI 80  
WD40-rpts       (_________________WD 1_________________)   (________________WD 2_______________

Query       81 YNCDPFKETFRRELGIGGFKIVEMLFRCNILALVGSGSNSQYPPNKVLIWDDYKSQCIGEFSFRSEIRAVKLKREHFIVV 160 
WD40-rpts      _)   (____________________WD 3____________________)   (_______________WD 4______

Query      161 LEHKIYVYTLMDVKLLHQIETVTNPRGLCCLSHHVNTFVLACPGLHRGQVHVEHFGLNMTKLFNAHDSHIACMTLTMDGL 240 
WD40-rpts      ________)   (__________________WD 5_________________)   (_________________WD 6__

Query      241 LLATASTKGTLIRIFNTLDGMLLQEVRRGMDRAEIFSLALSPNVQWLAAASDKGTVHVFSLRVRVVGAGSSSDTNVIQGK 320 
WD40-rpts      _______________)   (__________________WD 7_________________)   (________________

Query      321 TLFQQNSSNALDTLVPLNTGSNPSSSLSFMRGVLPRYFSSEWSFAQFHLPEATQYIAAFGSQNTIIIVGMDGSFYKCSFD 400 
WD40-rpts      _WD 8________________)                                                          

Query      401 PVQGGEMLQQECIRFLKIEIGADRIDL 427 
WD40-rpts                                 

8 WD40-repeats found in QUERY=CmaCh04G028550 (Len=427):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     2-41       3.12  243.59  0.03200        7.5%     17.27
  WD 2:  Seg  2    45-82       4.26  290.59  0.00753       10.0%     45.79
  WD 3:  Seg  5    86-131      4.90  317.11  0.00331       15.0%     40.21
  WD 4:  Seg  9   135-169      3.17  245.61  0.03008       15.0%     42.03
  WD 5:  Seg 13   173-213      4.88  316.40  0.00339       10.0%     51.95
  WD 6:  Seg 17   217-256      7.81  437.33  7.9e-05       22.5%     57.45
  WD 7:  Seg 21   260-300      6.69  391.14  0.00033       25.0%     54.55
  WD 8:  Seg 25   304-342      5.61  346.49  0.00133        5.0%      5.16

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    2-41     LIRQSAMLP--LSDLYCLAVKTFRGVLKPE-------MASTQES-SEIGA
   WD 2   45-82     -IDQKEQNG--KSELELHSVFWNQDYSCFA-------AGT-SCG-FRIYN
   WD 3   86-131    -FKETFRRE--LGIGGFKIVEMLFRCNILALVGSGSNSQYPPNK-VLIWD
   WD 4  135-169    -SQCIGEF---SFRSEIRAVKLKREHFIVV-------L---EHK-IYVYT
   WD 5  173-213    -VKLLHQIETVTNPRGLCCLSHHVNTFVLA-------CPGLHRG-QVHVE
   WD 6  217-256    -LNMTKLFN--AHDSHIACMTLTMDGLLLA-------TASTKGTLIRIFN
   WD 7  260-300    -GMLLQEVRRGMDRAEIFSLALSPNVQWLA-------AASDKGT-VHVFS
   WD 8  304-342    -RVVGAGSS--SDTNVIQGKTLFQQNSSNA-------LDTLVPL-NTGSN

   WD40 Template    TGECLRTLS--GHTSGVTSVSFSPDGKRLV-------SGSEDGT-IKVWD