Input parameters:

  Query = CmaCh08G003130 (Len=323)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh08G003130, Len=323):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEVNLGGIPFDLDFHPSEQLVAAGLIDGNLLLYRYSPNALPQRLLKVRAHSESCRAVRFINGGRAILTGSPDHSILATDV 80  
WD40-rpts      (______________WD 1______________)      (_________________WD 2________________) 

Query       81 ETGSVIARLEDAHDDAVNRLVNVTSETIASGDDNGCIKVWDTRQRSCCNSFEAHEDYISDMTYSSDSMKLLATSGDGTLS 160 
WD40-rpts        (_________________WD 3________________)   (_________________WD 4______________

Query      161 VCNLRRNKVHARSEFSEVELLSVVIMKNGRKVVCGSQTGTLLLYSWGCFKDCSDRFVDLSQNPVNALLKLDEDRVVAASE 240 
WD40-rpts      __)   (_________________WD 5________________)(___________________WD 6___________

Query      241 SGLISLVGVLPNRIIQPIAEHSDYPVERLAFSHDKKFLGSISHDYMLKLWDMDLLQSSENVSNGPAVVAAGASASDNLFA 320 
WD40-rpts      _______)   (_________________WD 7_________________)                             

Query      321 FMD 323 
WD40-rpts         

7 WD40-repeats found in QUERY=CmaCh08G003130 (Len=323):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-34       7.22  413.01  0.00017       12.5%     44.28
  WD 2:  Seg  4    41-79       8.71  474.43  2.5e-05       25.0%     55.48
  WD 3:  Seg  8    83-121      9.41  503.25  1.0e-05       25.0%     55.65
  WD 4:  Seg 12   125-163      9.82  520.39  6.0e-06       25.0%     58.95
  WD 5:  Seg 16   167-205      8.93  483.57  1.9e-05       20.0%     55.35
  WD 6:  Seg 20   206-248      8.48  465.00  3.4e-05       22.5%     54.37
  WD 7:  Seg 24   252-291      8.44  463.31  3.5e-05       32.5%     59.81

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-34     ---------MEVNLGG-IPFDLDFHPSEQLVAAGLIDGNLLLYR
   WD 2   41-79     -P---QRLLKVRAHSE-SCRAVRFINGGRAILTGSPDHSILATD
   WD 3   83-121    -G---SVIARLEDAHD-DAVNRLVNVTSETIASGDDNGCIKVWD
   WD 4  125-163    -R---SCCNSFEAHED-YISDMTYSSDSMKLLATSGDGTLSVCN
   WD 5  167-205    -N---KVHARSEFSEV-ELLSVVIMKNGRKVVCGSQTGTLLLYS
   WD 6  206-248    WGCFKDCSDRFVDLSQ-NPVNALLKLDEDRVVAASESGLISLVG
   WD 7  252-291    -N---RIIQPIAEHSDYPVERLAFSHDKKFLGSISHDYMLKLWD

   WD40 Template    TG---ECLRTLSGHTS-GVTSVSFSPDGKRLVSGSEDGTIKVWD