Input parameters:

  Query = TPR2 (Len=1131)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (TPR2, Len=1131):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSSLSRELVFLILQFLDEEKFKESVHKLEQESGFFFNIKYFEEKALAGEWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQK 80  
WD40-rpts                                                                                      

Query       81 YLEALDRNDRAKAVEILAKDLKVFATFNEELYKEITQLLTLENFRENEQLSKYGDTKSARSIMYTELKKLIEANPLFREK 160 
WD40-rpts                                                                                      

Query      161 LAFPSFKASRLRTLINQSLNWQHQLCKNPRPNPDIKTLFLDHSCSPSNGARALTPVNLPVAAVARPSNFVPLGVHGGPFQ 240 
WD40-rpts                                              (_______________________________________

Query      241 SNPAPAPNANALAGWMANPNPSSSVPSGVVAASPFPMQPSQVNELKHPRAPSNSLGLMDYQSADHEQLMKRLRSAQTSNE 320 
WD40-rpts      WD 1_______________________________________)           (_________________WD 2___

Query      321 VTYPAHSHPPASLDDLPRNVVSTIRQGSVVISMDFHPSHHTLLAVGCSSGEVTLWEVGSREKVVTEPFKIWNMAACSVIF 400 
WD40-rpts      ______________)(__________________WD 3_________________)            (___________

Query      401 QGSIVKEPSISVTRVAWSPDGNLLGVSFTKHLIHVYAYQGSDLRQHLEIDAHVGCVNDLAFAHPNKQMCVVTCGDDKLIK 480 
WD40-rpts      ___________WD 4_____________________)(____________________WD 5__________________

Query      481 VWDLSGKKLFTFEGHEAPVYSICPHQKENIQFIFSTALDGKIKAWLYDNVGSRVDYDAPGQWCTTMLYSADGSRLFSCGT 560 
WD40-rpts      __)  (__________________WD 6_________________)   (___________________WD 7_______

Query      561 SKEGDSFLVEWNESEGALKRTYLGFRKKSAGVVQFDTTRNRFLAVGEDNQIKFWNMDNTNLLTVVEAEGGLPNLPRLRFN 640 
WD40-rpts      ___________)   (_________________WD 8_________________)(___________________WD 9_

Query      641 KDGNLLAVTTADNGFKILANTDGLRTLRAFEARSFEASKASIDMKVSTSAMASSISPAIGKIEHMDAGSPARPTPIPNGI 720 
WD40-rpts      __________________)(____________________WD10___________________)   (____________

Query      721 EAMSRTMEKPRNLDSVDKSKPLELTEIVDPTQCRQVTMPDSKDSVSKVARLLYTNSGVGVLALGSNGVQRLWKWIRNEQN 800 
WD40-rpts      _____WD11________________)  (____________________WD12___________________)       

Query      801 PTGKATASVTPQHWQPNSGLLMANDVPENPEGSVPCIALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAF 880 
WD40-rpts                          (________________WD13________________)   (_________________W

Query      881 HPQDNNIIAIGMEDSSIHIYNVRVDEVKTKLKGHQKHITGLAFSTALNILVSSGADAQLFFWTADSWEKKKSSAIQLPPG 960 
WD40-rpts      D14_________________)   (_________________WD15________________)           (_____

Query      961 KAPVGDTRVQFHNDQIQLLVSHETQLAIYDASKMECIHKWVPQEALSSPITSASYSCNSQLVYASFADGNIAVFDAESLR 1040
WD40-rpts      __________WD16_______________)(____________________WD17___________________)     

Query     1041 LRCRIAPSAYMPQPTPNSAPIFPQVITAHPQEPNQLAVGLSDGSVKVIEPSELSRRWGVGVAAGSDKAGTENGRPSSSSA 1120
WD40-rpts           (___________________WD18___________________)                               

Query     1121 ANNSSSDQIQR 1131
WD40-rpts                 

18 WD40-repeats found in QUERY=TPR2 (Len=1131):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4   201-284      3.75  269.46  0.01446       20.0%      7.14
  WD 2:  Seg  5   296-335      3.83  272.87  0.01302       10.0%     41.94
  WD 3:  Seg  8   336-376      7.77  435.61  8.4e-05       22.5%     56.95
  WD 4:  Seg 13   389-437      6.90  399.80  0.00025       25.0%     47.41
  WD 5:  Seg 16   438-483      6.87  398.34  0.00027       27.5%     57.24
  WD 6:  Seg 20   486-526      7.42  421.08  0.00013       32.5%     55.93
  WD 7:  Seg 24   530-572      6.54  385.01  0.00040       22.5%     50.82
  WD 8:  Seg 28   576-615      7.06  406.22  0.00021       30.0%     57.33
  WD 9:  Seg 32   616-659      6.99  403.22  0.00023       17.5%     57.80
  WD10:  Seg 36   660-704      5.51  342.44  0.00151       17.5%     46.27
  WD11:  Seg 40   708-746      6.60  387.48  0.00037       10.0%     52.64
  WD12:  Seg 44   749-793      7.59  428.00  0.00011       15.0%     57.07
  WD13:  Seg 48   821-858      5.47  340.53  0.00160       10.0%     41.85
  WD14:  Seg 51   862-901      7.00  403.92  0.00022       22.5%     59.28
  WD15:  Seg 55   905-943      8.75  476.05  2.4e-05       30.0%     56.79
  WD16:  Seg 59   955-990      4.30  292.41  0.00712       17.5%     43.04
  WD17:  Seg 62   991-1035     7.28  415.34  0.00016       25.0%     51.36
  WD18:  Seg 67  1046-1089     5.86  356.81  0.00097       15.0%     41.82

Multiple sequence alignment of 18 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  201-284    DH----S----CSPSNGARALTPVNLPVAAVARPSNFVPLGVHGGPFQSNPAPAPNA---------NAL-----AGW-MA-----NPNPS-SS--VP---SGV-V--AAS----PFPMQPSQVNE
   WD 2  296-335    -G----L----M--------------------------------------------D---------YQS-----ADH-EQ-----LMKRLRSA--QT---SNE-V--TYP----AHSHPPASLDD
   WD 3  336-376    LP----R----N--------------------------------------------V---------VST-----IRQ-GS-----VVISM-DF--HP---SHHTL--LAV----GCSSGEVTLWE
   WD 4  389-437    KI----W----N--------------------------------------------MAACSVIFQGSIV-----KEP-SI-----SVTRV-AW--SP---DGN-L--LGV----SFTKHLIHVYA
   WD 5  438-483    YQGSDLR----Q--------------------------------------------H---------LEI-----DAH-VG-----CVNDL-AF--AH---PNK-QMCVVT----CGDDKLIKVWD
   WD 6  486-526    -G----K----K--------------------------------------------L---------FTF-----EGH-EA-----PVYSI-CPHQKE---NIQ-F--IFS----TALDGKIKAWL
   WD 7  530-572    -V----G----S--------------------------------------------R---------VDY-----DAP-GQ-----WCTTM-LY--SA---DGS-R--LFSCGTSKEGDSFLVEWN
   WD 8  576-615    -G----A----L--------------------------------------------K---------RTY-----LGFRKK-----SAGVV-QF--DT---TRN-R--FLA----VGEDNQIKFWN
   WD 9  616-659    MD----NTNLLT--------------------------------------------V---------VEA-----EGG-LP-----NLPRL-RF--NK---DGN-L--LAV----TTADNGFKILA
   WD10  660-704    NT----D----G--------------------------------------------L---------RTL-----RAF-EARSFEASKASI-DM--KV---STS-A--MAS----SISPAIGKIEH
   WD11  708-746    -G----S----P--------------------------------------------A---------RPT-----PIP-NG-----IEAMS-RT--ME---KPR-N--LDS----VDKSKPLELTE
   WD12  749-793    DP----T----Q--------------------------------------------C---------RQVTMPDSKDS-VS-----KVARL-LY--TN---SGV-G--VLA----LGSNGVQRLWK
   WD13  821-858    -L----M----A--------------------------------------------N---------DVP-----ENP-EG-----SVPCI-AL--SK---NDS-Y--VMS----AC-GGKVSLFN
   WD14  862-901    -F----K----V--------------------------------------------M---------TTF-----MPP-PP-----ASTFL-AF--HP--QDNN-I--IAI----GMEDSSIHIYN
   WD15  905-943    -D----E----V--------------------------------------------K---------TKL-----KGH-QK-----HITGL-AF--ST---ALN-I--LVS----SGADAQLFFWT
   WD16  955-990    -----------I--------------------------------------------Q---------LPP-----GKA-PV-----GDTRV-QF--HN---DQ--I--QLL----VSHETQLAIYD
   WD17  991-1035   AS----K----M---------------------------------------ECIHKW---------VPQ-----EAL-SS-----PITSA-SY--SC---NSQ-L--VYA----SFADGNIAVFD
   WD18 1046-1089   AP----S----A-------------------------------------------YM---------PQP-----TPN-SA-----PIFPQ-VI--TAHPQEPN-Q--LAV----GLSDGSVKVIE

   WD40 Template    TG----E----C--------------------------------------------L---------RTL-----SGH-TS-----GVTSV-SF--SP---DGK-R--LVS----GSEDGTIKVWD