WDRR: WD40 Repeat Recognition
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| JobID: YTWH61659462312 Submitted: 2022-08-03 01:45:12 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79789112 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CmaCh08G003190 (Len=3622) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CmaCh08G003190, Len=3622): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MFQGSRGKTMKWVTLLKDIKEKVGLTPSHSAGSAPSVGSSSSSSSSSILASSARDNHGSYPARRPGSASSPARSRHELES 80
WD40-rpts
Query 81 DFKLYWEEFRSSSSEKEKEAALNMTVDTFCRLVKQHANVAQLITMFVETHIFSFVVGRAFVTDIEKLKISSKRRSLDVVK 160
WD40-rpts
Query 161 VLKYFAEFAEDIISPGANLLTAVEVLVSGPIDKQSLLDSGIFCCLIHILNALLDPDEANQRERIASNEEKSEKSALVEDH 240
WD40-rpts
Query 241 NVLGRQGRRLEIEGSVVHIMKALASHPSAAQSLIEDDSLQMLFQMVANGSLTVFSQYMEGLVPLHNIQLHRHAMQILNLL 320
WD40-rpts
Query 321 LVNDSGSTAKYIRKHHLIKILLMAVKEYDPNCGDSAYTMGIVDLLLECVRLSYRPEANGISLREDIRNAHGYHFLVQFAL 400
WD40-rpts
Query 401 ILSTLPRSQSFKSIKSSPIQDHIQGTDISSPTNDKEKQDYMEQDVPSLQLFPTLSRLLDVLVNLAQTGPQESECSSTGKR 480
WD40-rpts
Query 481 SKSTYSKSSDHSKSRTSSSDRLTDDLWEEGNNKVKDLEAVQMLQDIFLKADNRELQAEVLNRMFKIFSSHLENYKLCQQL 560
WD40-rpts
Query 561 RTVPLLILNMAGFPSSLQEIILKILEYAVTVVNCVPEQELLSLCCLLQQPIRSELKHTILSFFVKLLSFDHHYKKVLREV 640
WD40-rpts
Query 641 GVLEVLLDDLKHHRFLQGSDQHGGNVNQLVKKSSASSFKKHLDSKDTILASPKLLDTCSGKFPIFEVESTTTVAWDCIVS 720
WD40-rpts
Query 721 LLKKAEASQTSFRSSNGVTIVLPFLVSNVHRQGVLRLLSCLITEDTAQAHPEELSAIIEILKSGMVTSISGSQYRLHNEA 800
WD40-rpts
Query 801 KCETMGTLWRILEVNNSAQRIFGEVTGFSLLLTILHSFQSGGDSYECPIEDRIKVFKYLMRVVTAGVCDNAVNRMKLHTV 880
WD40-rpts
Query 881 ILSQTFNDLLSESGLICVEFERQVIQLLLELCLEMVLPPYMNLEDAPSSSSMESNSSSFHLITPSGSFHPNKERVYNAGA 960
WD40-rpts
Query 961 IRILIRLLLLFTPKVQLEVLDIIEKLARAGPFNQENLTSVGCVELLLETIRPFLLGSSPLLAYTLKIVEVLGAYRLSASE 1040
WD40-rpts
Query 1041 LRMLVRFVLQMRLLKSGHILIDMMERLVHMEDMASESLSLAPFLEMDMSKIGHASIQVSLGERSWPPAAGYSFVCWFQFH 1120
WD40-rpts
Query 1121 NLLKSQGKEFDSSKVGPSKRWTAKNVQSQDQQILRIFSVGAASNDNTFYAELYLQEDGVLTLATSNSSSLSFSGIDLEEG 1200
WD40-rpts
Query 1201 RWHHLAVVHSKPNALAGLFQASIAYVYLNGKLKHTGKLAYAPSPVGKSLQVNIGTPVVCAKVSDMHWKLRSCYLFEEVLT 1280
WD40-rpts
Query 1281 PGCICFMYILGRGYRGIFQDTDLLRFVPNQACGGGSMAILDSLDADLALTHNMQKHDGSSKLGDTRADGSGIVWDMERLG 1360
WD40-rpts
Query 1361 NLSLQLSGKKLIFAFDGTSAEAIRVSGVLSMLNLVDPMSAAASPIGGIPRFGRLHGDVYVCKQCVIGDIIRPVGGMTVIL 1440
WD40-rpts
Query 1441 ALVEASETRDMLHMALTLLACALHQNPQNVRDMQTYRGYHLLTLFLHRRMSLFDMQSLEIFFKIAACEASFAEPKRLESF 1520
WD40-rpts
Query 1521 QTNFSPTNTFQDSCYEELNLSKLRDEVSSIGSHGDLDDFSAPKDSFSHISELENPEMPGETSNCVVLSNPDMVEHVLLDW 1600
WD40-rpts
Query 1601 TLWVTSPVTIQIALLGFLEHLVSMHWYRNHNLTVLRRINLVQHLLVTLQRGDVEVPVLEKLVVLLGVILEDGFLVSELEL 1680
WD40-rpts
Query 1681 VVKFVIMTFDPPQLTPRRPISRESMGKHVIVRNMLVEMLIDLQVTIRSEDLLEQWHKIVSSKLITYFLDEAVHPSSMRWI 1760
WD40-rpts
Query 1761 MTLLGVCLTSSPTFALKFRTSGGYQGLVRVLPSFYDSPDIYYILFCLIFGKPVYPRLPEVRMLDFHALMPSDGSFVELKF 1840
WD40-rpts
Query 1841 VELLEPVIAMAKSTFDRLSVQSMLAHQTGNLSQASAGLVAELAEGNADNAGELQGEALMHKTYAARLMGGEASAPAAATS 1920
WD40-rpts
Query 1921 VLRFMVDLAKMCHPFSAVCRRADFLESCVDLYFSCVRAAYALKMAKELSVKTEEKNSNDCDDASSSQNTFSSMPQEQDLS 2000
WD40-rpts
Query 2001 VKTSISVGSFPQAQASTSSDDTAVPQNEPSLREEINTVQSPRTSIKSGHDFQVAESLVGDNIDQESVISSTNEFSFRPTK 2080
WD40-rpts
Query 2081 VTQEPLQPIDSHSTASLNLIDSPSLSEKSNIRAPHTTSSSPVVALASWLGNASSNELKSPPVAPPSVESFVSAVEFDPSS 2160
WD40-rpts
Query 2161 DLKSTSQGHPSANTFFSVSPKLLLEMDDSGYGGGPCSAGATAVLDFMAEVLSDILTEQIKAAPVIESILENVPLYVDMES 2240
WD40-rpts
Query 2241 MLVFQGLCLSRLMNFLERRLLRDDEEDEKKLDKTRWSANLDAFCWMIVDRVYMGAFPQPSGVLKTLEFLLSMLQLSNKDG 2320
WD40-rpts
Query 2321 RIEVSPSGKGLLSIARGSKQLDAYVNSILKNTSRMILYCFLPTFLISIGEDGLLSCLGLLMEPKKRSYSGSYYGDSGLDI 2400
WD40-rpts
Query 2401 CAVLQLLVAHRRVIFCPSNVDTDLNCCLCVNLISLLRDSRQYVQNMAVDVVRYLLVHRRPALEDLLVSKPNQGLSLDVLH 2480
WD40-rpts
Query 2481 GGFDKLLTGSLPDFFDWLQASEQIVNKVLEQCAAIMWVQYIAGSAKFPGVRIKAMEGRRKKEMGRRSRDISKLDMRHWEQ 2560
WD40-rpts
Query 2561 VNERRYALDLVRDSMSTELRVLRQDKYGWVLHAESEWKSHLQQLVHERSIFPIASSSVTDDTEWQLCPIEGPYRMRKKLE 2640
WD40-rpts
Query 2641 RSKLKIDTIQNALDGKFELKEAELIKGGNGLDASDGESESYFRLLTDNAKQNDSDSDLYDEPMFNESDDVRDETSVKNGW 2720
WD40-rpts
Query 2721 NDDRASSVNDASLHSALEFGAKSSSVSVPVAESFQGRSDLGSPIQSSSARIEEVKVSDDNKYDKELHDDGEYLIRPYLEP 2800
WD40-rpts
Query 2801 LEKIRFRYNCERVIGLDKHDGIFLIGEFCLYVIENFYIDDSGCICEKECENELSVIDQALGVKKDCLGSMDFQSKSTSSW 2880
WD40-rpts
Query 2881 GVIVKSWSGGRAWAYSGGAWGKEKVGSSGNLPHPWRMWKLDSVHEILKRDYQLRPVAVEIFSMDGCNDLLVFHKKEREEV 2960
WD40-rpts
Query 2961 FKNLVAMNLPRNSMLDTTISGSTKQESSEGSRLFKIMAKSFSKRWQNGEISNFQYLMHLNTLAGRGYSDLTQYPVFPWVL 3040
WD40-rpts
Query 3041 ADYESENLDLTDPKSFRMLAKSMGCQTPEGEEEFKKRYESWDDPEVPKFHYGSHYSSAGIVLFYLLRLPPFSAENQKLQG 3120
WD40-rpts
Query 3121 GQFDHADRLFNSIRDTWLSAAGKGNTSDVKELIPEFFYMPEFLENRFNLDLGEKQSGEKVGDVFLPPWAKGSAREFIRKH 3200
WD40-rpts
Query 3201 REALESDFVSENLHHWIDLIFGYKQRGKAAEEATNVFYHYTYEGSVDIDSVTDPAMKASILAQINHFGQTPKQLFLKPHV 3280
WD40-rpts
Query 3281 KRRVDRKFPHPLKHSNLVVPHEIRKSLSSITQIVTSNEKILVAGANTLLKPRSYTKYVAWGFPDRSLRFLSYDQDRLLST 3360
WD40-rpts (________
Query 3361 HENLHEGYQIQCAGVSHDGCILVTGADDGLVWVWRITKYAPRLVRRLQLEKALSGHTAKITCLYVSQPYMLIASGSDDCT 3440
WD40-rpts ___________WD 1___________________) (_________________WD 2____________
Query 3441 VIIWDLSSLVFVRQLPKFPTAISAIYVNDLTGEIVTAAGILLAVWSINGDCLAMVNTSQLPSDSILSITSSTFSDWLDTN 3520
WD40-rpts ____) (___________________WD 3_____
Query 3521 WYATGHQSGAVKVWQMVHFSNPVSQIKSTGSSMVGLNLDNKVAEYRLILHKVLKFHKHPVTALHLTSDLKQLLSGDSNGH 3600
WD40-rpts ______________) (_________________WD 4____________
Query 3601 LVSWTLPGESLKAAAAASMNLG 3622
WD40-rpts ____)
 4 WD40-repeats found in QUERY=CmaCh08G003190 (Len=3622): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 44 3352-3395 4.21 288.54 0.00802 25.0% 49.77 WD 2: Seg 48 3407-3445 6.72 392.09 0.00032 35.0% 57.12 WD 3: Seg 56 3492-3535 3.07 241.55 0.03405 22.5% 52.46 WD 4: Seg 63 3567-3605 5.70 350.09 0.00119 27.5% 47.31Multiple sequence alignment of 4 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 3352-3395 YDQDRLLSTHENLHEGYQIQCAGVSH-----DGCILVTGADDGLVWVWR WD 2 3407-3445 -LQ----LEKALSGHTAKITCLYVSQ-----PYMLIASGSDDCTVIIWD WD 3 3492-3535 -LA----MVNTSQLPSDSILSITSSTFSDWLDTNWYATGHQSGAVKVWQ WD 4 3567-3605 -LI----LHKVLKFHKHPVTALHLTS-----DLKQLLSGDSNGHLVSWT WD40 Template TGE----CLRTLSGHTSGVTSVSFSP-----DGKRLVSGSEDGTIKVWD |
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Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University Powered and maintained by Chuan Wang Last modified: 09 Jan 2019 |