WDRR: WD40 Repeat Recognition
| [HOME] [JOB LIST] [PRE-CALCULATED RESULTS] [VISITORS] [ABOUT] |
| JobID: YTSB61659460463 Submitted: 2022-08-03 01:14:23 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79790689 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CmaCh02G014960 (Len=502) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CmaCh02G014960, Len=502): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MEDQPIPQRTQQSSSRPSPSPSSSSNSSSSHLNLPPSMSRAPHSLETLTPSRQIDRMININHHLSPSRAIYSDRFIPSRS 80
WD40-rpts
Query 81 GSNFAFFDISPVSNSHSDAREDTSSAYVTLLRTALFGPDAGVVPPATPEKRTSPMSLPNHNIFRYKTETRRSMDSLSPFG 160
WD40-rpts (__________
Query 161 FDNAAPGINPSPVKTPRKVPRSPYKVLDAPALQDDFYLNLVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVC 240
WD40-rpts _______WD 1________________)(______________WD 2_____________)(__________________
Query 241 SVGWAQRGTHLAVGTSNGKVQIWDASRCKRIRTMEGHRLRIGALAWSSSLLSSGSRDKSILQRDIRAQDDFVSKLSGHKS 320
WD40-rpts _WD 3__________________) (________________WD 4_______________) (___________
Query 321 EVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKFYEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLS 400
WD40-rpts ______WD 5________________) (__________________WD 6__________________) (____
Query 401 CMDTGSQVCNLAWSKNVNELVSTHGFSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVFP 480
WD40-rpts _____________WD 7_________________) (_________________WD 8________________)
Query 481 SPKSQNTENEIGASFLGRTTIR 502
WD40-rpts
 8 WD40-repeats found in QUERY=CmaCh02G014960 (Len=502): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 1 150-188 4.20 288.24 0.00810 15.0% 16.30 WD 2: Seg 3 189-221 2.94 236.30 0.03996 2.5% 43.38 WD 3: Seg 6 222-264 7.53 425.78 0.00011 27.5% 53.69 WD 4: Seg 10 268-304 6.80 395.44 0.00029 30.0% 56.79 WD 5: Seg 14 309-347 9.29 498.48 1.2e-05 35.0% 56.73 WD 6: Seg 18 351-392 7.32 416.97 0.00015 25.0% 46.52 WD 7: Seg 22 396-435 5.28 332.79 0.00204 27.5% 51.18 WD 8: Seg 26 439-477 9.96 526.11 5.0e-06 40.0% 58.19Multiple sequence alignment of 8 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 150-188 -RRSMDSLS---PFGFDNAAPGINPSPVKTPR---KVPRSPYKVLD WD 2 189-221 -------AP---ALQDDFYLNLVDWSSHNVLA---VGLGNCVYLWN WD 3 222-264 ACSSKVTKLCDLGIDDSVCSVGWAQRGTHLAV---GTSNGKVQIWD WD 4 268-304 -CKRIRTME---GHRLRIGALAWSSS--LLSS---GSRDKSILQRD WD 5 309-347 -DDFVSKLS---GHKSEVCGLKWSYDNRELAS---GGNDNRLFVWN WD 6 351-392 -TQPVLKFY---EHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWN WD 7 396-435 -NTHLSCMD---TG-SQVCNLAWSKNVNELVS-THGFSQNQIIVWR WD 8 439-477 -MSKLATLT---GHTFRVLYLAISPDGQTIVT---GAGDETLRFWN WD40 Template TGECLRTLS---GHTSGVTSVSFSPDGKRLVS---GSEDGTIKVWD |
|
Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University Powered and maintained by Chuan Wang Last modified: 09 Jan 2019 |