WDRR: WD40 Repeat Recognition
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| JobID: YQX5J1659460450 Submitted: 2022-08-03 01:14:10 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79789923 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CmaCh02G011830 (Len=573) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CmaCh02G011830, Len=573): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MYFMAFECQKSAGFCKDSRVIVKNSCEKPTGGSSYFKLKGKSAGIESEKSEFDLEKGDTTSLSSKQLGCRNVPLGCRSIT 80
WD40-rpts
Query 81 DLPPAIISEILNCLDPKELGIVSCVSTILHRLASEHHVWKEFYNERWGLPIPALPAPVAATGFSDEKSWKDIFVEREFRS 160
WD40-rpts (_________________WD 1_______________
Query 161 KTFMGRYSMEVLHGHTEAVRTVFLLVSAKLIFTSGYDSIVRIWDLEEGLSIASSRSLGCTVRALAADTKLLVAGGTDGFI 240
WD40-rpts _) (_________________WD 2________________)(_________________WD 3______________
Query 241 HCWKAIEGLPHLFDVKGPQNHNTEFRLWEHEGPITTLALDLTRIYSGSWDMTVRVWDRFSQKCLRILRHGDWVWGLVPHD 320
WD40-rpts ___) (________________WD 4_______________) (_______________WD 5
Query 321 TTIASTSGSDVYVWDTNSGELATVIHDAHVGKAYALSRSHTGDFLFTGGEDGAIHMFDVTNRHVDTSAQLVGSWIPHSGP 400
WD40-rpts ______________) (_________________WD 6_________________) (____________
Query 401 VYSLAFEFPWLVSASSDGKLSLIDVRALLRTRKRTLWKRDSAGQHVGRSIGVEPPQRMLHGFGSNLFGVDIGLDRIVCGG 480
WD40-rpts ____WD 7_______________) (________________WD 8_______
Query 481 EEGVVRIWNFSQALETERRARALRGIRLENRMRRRRLQIEMNTKGGGGGPGGGGGGGRGRSDRCSVAAKKKLMNSDNVSV 560
WD40-rpts ________) (____________________WD 9___________________)
Query 561 WHNKRGVSGKLKA 573
WD40-rpts
 9 WD40-repeats found in QUERY=CmaCh02G011830 (Len=573): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 2 124-162 6.02 363.41 0.00079 12.5% 47.62 WD 2: Seg 6 166-204 9.52 507.85 8.9e-06 25.0% 55.41 WD 3: Seg 10 205-244 7.69 432.37 9.3e-05 35.0% 48.03 WD 4: Seg 14 261-297 6.50 383.30 0.00042 32.5% 53.29 WD 5: Seg 18 301-335 4.58 303.72 0.00501 30.0% 48.12 WD 6: Seg 22 339-378 8.49 465.36 3.3e-05 32.5% 53.77 WD 7: Seg 26 388-424 6.80 395.73 0.00029 27.5% 55.53 WD 8: Seg 31 453-489 6.90 399.72 0.00026 30.0% 45.95 WD 9: Seg 33 497-541 3.55 261.44 0.01851 15.0% 4.19Multiple sequence alignment of 9 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 124-162 NERWGLPI-PALPAPVA------ATGFS-DEKSWKDIFVEREFRSKT WD 2 166-204 -RYSMEVL-HGHTEAVR------TVFLLVSAKLIFTSGYDSIVRIWD WD 3 205-244 LEEGLSIA-SSRSLGCT------VRALAADTKLLVAGGTDGFIHCWK WD 4 261-297 -HNTEFRL-WEHEGPIT------TLAL--DLTRIYSGSWDMTVRVWD WD 5 301-335 -QKCLRIL--RHGDWVW------GL--VPHDTTIASTS-GSDVYVWD WD 6 339-378 -GELATVIHDAHVGKAY------ALSRSHTGDFLFTGGEDGAIHMFD WD 7 388-424 -AQLVGSW-IPHSGPVY------SLAF--EFPWLVSASSDGKLSLID WD 8 453-489 -EPPQRML-HGFGSNLF------GVDIGLD--RIVCGGEEGVVRIWN WD 9 497-541 -ERRARAL-RGIRLENRMRRRRLQIEMNTKGGGGGPGGGGGGGRGRS WD40 Template TGECLRTL-SGHTSGVT------SVSFSPDGKRLVSGSEDGTIKVWD |
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