Input parameters:

  Query = BGIBMGA000229 (Len=337)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (BGIBMGA000229, Len=337):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAIPDYKLSAILNGHSMDVRSVAATKEFCILSASRDRTAKLWHPEGVKEFVNVITYKGHRNFVSCICWVPPCVSFPEGLV 80  
WD40-rpts          (_________________WD 1________________)      (___________________WD 2_______

Query       81 VTGSNDNTILGYNLQDGTVLLTLEGHENAVCSVSPGRDSGILLSISINPAVQNGFATSGEGGSVRLWTGGDCIREIRLPV 160 
WD40-rpts      ____________)   (_________________WD 3________________)             (___________

Query      161 QSVWSVTCLENGDIVTGSSDGVIRVFTKDPARFADEETIKNFEEEVEKIQASSEQEIGGFKVSELPGPEVLLEPGKSDGQ 240 
WD40-rpts      ______WD 4________________)             (____________________WD 5_______________

Query      241 TKLVRRGAAVKCYSWSVAENTWNEIGDVMGANPASEGKTMYQGKEYDFVFSVDIKDGAPPIKLPYNKTEDPWAAAQAFIH 320 
WD40-rpts      ____) (_____________________WD 6____________________)                           

Query      321 RLVRCTLAMSARDRLTA 337 
WD40-rpts                       

6 WD40-repeats found in QUERY=BGIBMGA000229 (Len=337):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     5-43       8.16  451.54  5.1e-05       30.0%     52.27
  WD 2:  Seg  5    50-93       7.25  414.16  0.00016       27.5%     54.59
  WD 3:  Seg  9    97-135      9.08  489.85  1.6e-05       35.0%     45.84
  WD 4:  Seg 13   149-187      9.94  525.07  5.2e-06       35.0%     56.29
  WD 5:  Seg 17   201-245      4.55  302.65  0.00518       17.5%     34.67
  WD 6:  Seg 21   247-293      7.14  409.74  0.00019       15.0%     49.41

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    5-43     DY-------K-----LSAILNGHSMDVRSVAATKEF------CILSASRDRTAKLWH
   WD 2   50-93     -F-------V-----NVITYKGHRNFVSCICWVPPCVSFPEGLVVTGSNDNTILGYN
   WD 3   97-135    -G-------T-----VLLTLEGHENAVCSVSPGRDS-----GILLSISINPAVQNGF
   WD 4  149-187    GG-------D-----CIREIRLPVQSVWSVTCLENG-----D-IVTGSSDGVIRVFT
   WD 5  201-245    NF-------EEEVEKIQASSEQEIGGFKVSELPGPE-----VLLEPGKSDGQTKLVR
   WD 6  247-293    GAAVKCYSWS-----VAENTWNEIGDVMGANPASEG-----KTMYQGKEYDFVFSVD

   WD40 Template    TG-------E-----CLRTLSGHTSGVTSVSFSPDG-----KRLVSGSEDGTIKVWD