WDRR: WD40 Repeat Recognition
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| JobID: YLD2H1659516578 Submitted: 2022-08-03 16:49:38 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79734068 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CsaV3_4G001850 (Len=1139) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CsaV3_4G001850, Len=1139): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQK 80
WD40-rpts
Query 81 YLEALDKHDRSKAVDILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDK 160
WD40-rpts
Query 161 LQFPHLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANNPLLGSLPKPGGFPPLGAHGPFQ 240
WD40-rpts
Query 241 PTAAPVPAPLAGWMSNPSAVTHPAVSGGGAIGLGAPSIPAALKHPRTPPTNPSVEYPSADSDHVSKRPKPMGMSDEVNLP 320
WD40-rpts
Query 321 VNVLPVSFTGHGHAQNFNAPDDLPKTVMRTLNQGSNPMSMDFHPIQQTLLLVGTNVGEIGLWEVGSRERLVSKNFKVWDL 400
WD40-rpts (____________________WD 1____________________)
Query 401 NACSMPLQAALVKEPDVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDDMRQHLEIDAHVGGVNDLAFSNPNKQLCVIT 480
WD40-rpts (______________WD 2______________) (__________________WD 3_______
Query 481 CGDDKTIKVWDAGNGARQYIFEGHEAPVFSVCPHYKENIQFIFSTALDGKIKAWLYDNMGSRVDYDAPGRWCTTMAYSAD 560
WD40-rpts __________) (__________________WD 4_________________) (___________________WD
Query 561 GTRLFSCGTSKDGDSYIVEWNESEGAVKRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDNVQLLTTVDADGGL 640
WD40-rpts 5__________________) (_________________WD 6_________________) (____________
Query 641 PASPRIRFNKDGTLLAVSGNENGIKILANVDGIRLLRTFENLSYDAARTSEAGTKPTINPISAAAAVAAAAAAGSAADRG 720
WD40-rpts ______WD 7_________________) (_________________WD 8________________) (
Query 721 ASVVTMSGVAGDSRSLGDVKPRIPEDSNDKSKIWKLTEINEPSQCRSLRLPENVRVNKISRLIYTNSGSAILALASNAIH 800
WD40-rpts _______________WD 9_______________)(______________________WD10__________________
Query 801 LLWKWTRSERNSTGKATANVLPQLWQPSSGILMTNDVADTSSEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTF 880
WD40-rpts ___) (___________________WD11___________________) (______
Query 881 MPPPPAATFLAFHPQDNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSHLLNVLVSSGADAQLCVWSSDVWE 960
WD40-rpts ___________WD12_________________) (_________________WD13________________)
Query 961 KQKTRFLQLPSGRPPSSQSDTRVQFHQDQVHFLVVHETQIAIYETTKLECVKQWTPRESGAPISHATFSCDSQMIYASFL 1040
WD40-rpts (________________WD14________________)(___________________WD15____________
Query 1041 DATVCVFTVASLRLRCRISPSAYLPASVSNASVQPLVIAAHPQEANQFALGLSDGGVHVFEPLESEGKWGVPPPVENGSA 1120
WD40-rpts _______) (___________________WD16__________________)
Query 1121 SSVPTTPSVGASGSEQAPR 1139
WD40-rpts
 16 WD40-repeats found in QUERY=CsaV3_4G001850 (Len=1139): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 6 338-383 4.92 317.80 0.00324 30.0% 55.86 WD 2: Seg 11 411-444 6.29 374.33 0.00056 15.0% 50.59 WD 3: Seg 14 451-491 7.37 419.07 0.00014 35.0% 51.75 WD 4: Seg 18 495-535 7.18 411.32 0.00018 30.0% 57.72 WD 5: Seg 22 539-581 6.26 373.33 0.00058 25.0% 47.66 WD 6: Seg 26 585-624 7.36 418.77 0.00014 30.0% 58.09 WD 7: Seg 30 628-668 6.47 381.96 0.00044 22.5% 57.48 WD 8: Seg 34 673-711 5.90 358.20 0.00093 12.5% 39.56 WD 9: Seg 38 720-755 4.74 310.58 0.00405 22.5% 49.06 WD10: Seg 42 756-804 6.14 368.14 0.00068 7.5% 48.31 WD11: Seg 47 827-870 4.51 300.82 0.00549 15.0% 44.64 WD12: Seg 51 874-913 7.01 404.31 0.00022 22.5% 59.50 WD13: Seg 55 917-955 8.86 480.64 2.1e-05 32.5% 57.39 WD14: Seg 60 967-1004 3.71 268.09 0.01508 12.5% 29.76 WD15: Seg 63 1005-1048 6.54 384.68 0.00041 20.0% 54.46 WD16: Seg 68 1059-1101 5.32 334.44 0.00193 15.0% 47.27Multiple sequence alignment of 16 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 338-383 NAPDDLPKT---------V----M-----RTLN--QG-S-NPMSM--DFHP-IQQTLL--L----VGTNVGEIGLWE WD 2 411-444 ------------------------------LVK--EPDV-SVNRV--IWSP-DGS-LF--G----VAYSRHIVQIYS WD 3 451-491 -M------R---------Q----H-----LEID--AHVG-GVNDL--AFSN-PNK-QLCVI----TCGDDKTIKVWD WD 4 495-535 -G------A---------R----Q-----YIFE--GHEA-PVFSVCPHYKE-NIQ-FI--F----STALDGKIKAWL WD 5 539-581 -M------G---------S----R-----VDYD--APGR-WCTTM--AYSA-DGT-RL--FSCGTSKDGDSYIVEWN WD 6 585-624 -G------A---------V----K-----RTYQ--GFRKRSLGVV--QFDT-TKN-RF--L----AAGDDFSIKFWD WD 7 628-668 -V------Q---------L----L-----TTVDADGGLP-ASPRI--RFNK-DGT-LL--A----VSGNENGIKILA WD 8 673-711 -I------R---------L----L-----RTFE--NLSY-DAART--SEAG-TKP-TI--N----PISAAAAVAAAA WD 9 720-755 -G------A---------S----V-----VTMS--GVAG-DSRSL-----G-DVK-PR--I----PEDSNDKSKIWK WD10 756-804 LT------EINEPSQCRSL----R-----LPEN--VRVN-KISRL--IYTN-SGS-AI--L----ALASNAIHLLWK WD11 827-870 PS------S---------G----ILMTNDVADT--SSEE-AVPCF--ALSK-NDS-YV--M----SAS-GGKISLFN WD12 874-913 -F------K---------T----M-----TTFM--PPPP-AATFL--AFHPQDNN-II--A----IGMDDSTIQIYN WD13 917-955 -D------E---------V----K-----SKLK--GHSK-RITGL--AFSH-LLN-VL--V----SSGADAQLCVWS WD14 967-1004 -L------Q---------L----P-----SGRP--PSSQ-SDTRV--QFHQ-DQV-HF--L----V-VHETQIAIYE WD15 1005-1048 TT------K---------LECVKQ-----WTPR--ESGA-PISHA--TFSC-DSQ-MI--Y----ASFLDATVCVFT WD16 1059-1101 SP------S-------AYL----P-----ASVS--NASV-QPLVI--AAHPQEAN-QF--A----LGLSDGGVHVFE WD40 Template TG------E---------C----L-----RTLS--GHTS-GVTSV--SFSP-DGK-RL--V----SGSEDGTIKVWD |
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