Input parameters:

  Query = CsaV3_7G028370 (Len=528)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_7G028370, Len=528):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAEPNSSSLTRTFPVKPKLKSKPRTPKQTPESKYWSSFKRHEIPNLLSSVSSIAFSPTNPSIFCATHSASLTLFSAQTMA 80  
WD40-rpts                                        (__________________WD 1_________________)   (_

Query       81 PTSTISSFRDVVSCASFRCDGLLIAASDLSGLVQVFDVKTRTPLRKLRSHSRPVQFVQYPVLDKLHLVSGGDDAVVKYWD 160 
WD40-rpts      ________________WD 2________________)   (_________________WD 3_________________)

Query      161 VASQTPISDFLGHKDYVRCGACSPASMDMFITGSYDHTVKLWDARTNSKSVLEVNHGKPVEDVIFLPSGGLVATAGGNSV 240 
WD40-rpts         (_________________WD 4_________________)   (________________WD 5_____________

Query      241 KIWDVIGGGKMVCSMESHNKTVTSLCVGKKLGQDSGEESDQFRILSVALDGYMKVFDYSKMKVTHSMRFPTPLMSVGFSP 320 
WD40-rpts      ___)    (______________________WD 6_____________________)   (________________WD 

Query      321 DCSTRVVGTSNGILYAGKRKTKESETTNLSNPWSLGTVGEPQRRVLRPSHFRYFHRGQGEKPSEGDYLVMKPKKVKLTEH 400 
WD40-rpts      7________________)  (_________________WD 8________________)                     

Query      401 DNLLKKFRHKDALVSVLASRNPENVVAVMEELVARKKLLKCVTNLDREELGSLLGFLQKYSTLPRYSNLLMGLTRKVVEL 480 
WD40-rpts                                                                                      

Query      481 RSEDVRAYGALKDHVRNLKRSVEEEIRIQQSLLEIQGIISPLLRIAGR 528 
WD40-rpts                                                      

8 WD40-repeats found in QUERY=CsaV3_7G028370 (Len=528):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    35-75       7.09  407.50  0.00020       17.5%     45.30
  WD 2:  Seg  5    79-117      8.21  453.83  4.8e-05       25.0%     57.81
  WD 3:  Seg  9   121-160      8.27  456.31  4.4e-05       37.5%     55.84
  WD 4:  Seg 13   164-203      7.91  441.25  7.0e-05       30.0%     55.08
  WD 5:  Seg 17   207-244      7.03  405.21  0.00022       22.5%     52.75
  WD 6:  Seg 21   249-297      7.39  419.75  0.00014       32.5%     58.44
  WD 7:  Seg 25   301-338      6.55  385.33  0.00040       25.0%     56.70
  WD 8:  Seg 29   341-379      5.07  323.95  0.00268        7.5%     37.83

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   35-75     WSSFKRHEIPNLLSSVSSIAF----------SP-TNP-SIFCATHSASLTLFS
   WD 2   79-117    -MAPTS-TISSFRDVVSCASF----------RC-DGL-LIAASDLSGLVQVFD
   WD 3  121-160    -RTPLR-KLRSHSRPVQFVQY----------PVLDKL-HLVSGGDDAVVKYWD
   WD 4  164-203    -QTPIS-DFLGHKDYVRCGAC----------SP-ASMDMFITGSYDHTVKLWD
   WD 5  207-244    -NSKSV-LEVNHGKPVEDVIF----------LP-SGG-LVATAG-GNSVKIWD
   WD 6  249-297    -GKMVC-SMESHNKTVTSLCVGKKLGQDSGEES-DQF-RILSVALDGYMKVFD
   WD 7  301-338    -MKVTH-SMRFPTP-LMSVGF----------SP-DCS-TRVVGTSNGILYAGK
   WD 8  341-379    -TKESE-TTNLSNPWSLGTVG----------EP-QRR-VLRPSHFRYFHRGQG

   WD40 Template    TGECLR-TLSGHTSGVTSVSF----------SP-DGK-RLVSGSEDGTIKVWD