WDRR: WD40 Repeat Recognition
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| JobID: YIX221659505043 Submitted: 2022-08-03 13:37:23 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79746147 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CmaCh17G013000 (Len=1639) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CmaCh17G013000, Len=1639): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MLRLRAFRPSNEKIVKIQMHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGIDQRRLVGAKLEKLAEGESDLKGRSAE 80
WD40-rpts (_________________WD 1________________)
Query 81 AIRGGSVKQVNFYDDDVRFWQLCRNRSAAAEAPSAVNQVTSAMSSFAPSTKGRHFLVICCENKAIFLDLVTMRGRDVPKQ 160
WD40-rpts (_________________WD 2________________) (_
Query 161 DLDNKSLLCMEFLSRTSGGEGPLVAFGGSDGVIRVLSMLTWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGASDGLLI 240
WD40-rpts ________________WD 3________________)(____________________WD 4__________________
Query 241 LWSADNSQDSRELVPKLSLKAHDGGVIAVELSRVIGGAPQLITIGADKTLAIWDTITFKELRRIKPVPKLACHSVASWCH 320
WD40-rpts __)(_______________________WD 5______________________)
Query 321 PRAPNLDILTCVKDSHIWAIEHPTHSALTRPLCELSSLVPPQMLAPNKKVRVYCMTAHPLQPHLVATGTNIGVIISELDA 400
WD40-rpts
Query 401 RSLPAVAPLPTPSGGREHSAVYVVERELKLLNFQLAHTTNPSLGNNGSLSEGGRLKGDELLQVKQGKKHISTPVPHDAYS 480
WD40-rpts (_________________WD 6________________) (_______________
Query 481 VLSVSSSGKYLAIIWPDIPYFSIYKVSDWSIVDSGSARLLAWDTCRDRFALLESAIPPRFPTIPKGGSSRRAKEAAAAAA 560
WD40-rpts ___WD 7_________________)
Query 561 QAAAAAASAASSASVQVRILLDDGTSNILMRSVGSRSEPVVGLHGGALLGVAYRTSRRISSVAATAISTMPLSGFGNSGV 640
WD40-rpts
Query 641 SSFSSFDGRFSSHRSSAETPPPNFQLYSWETFQPVGGLLPQPEWTAWDQTIEYCAFAYQHYIVVSALRPQYRYLGDVAIP 720
WD40-rpts
Query 721 YATGAVWHRRQLFVATPTTIECVFVDAGVAAIDIEMKRMKEEMKLKDAQAKAIAEHGELALITVDGPQTVAQERITLRPP 800
WD40-rpts
Query 801 MLQVVRLASFQQAPSVPPFLSLPKQSKVDADDSMMHKDTEDRRANEIAVGGGGVSVAVTRFPAEQKRPVGPLAVVGVRDG 880
WD40-rpts
Query 881 VLWLIDRYMSAHALSLNHPGIRCRCLAAYGDAISAVKWASRLGREHHDDLAQFMLGMGYAMEALHLPGISKRLEFDLAMQ 960
WD40-rpts
Query 961 GNDLKRALQCLLTMSNSRDMGQDNTGLDLSDILSLTTKKDDVVETFQGIVKFAKEFLDLIDAADATGQVDIAREALKRLA 1040
WD40-rpts
Query 1041 AAGSLKGALQGHELRGLALRLANHGELTRLSGLVNNLISVGSGREAAFAAAVLGDNVLMEKAWQDTGMLAEAVLHAQAHG 1120
WD40-rpts (________________________________________________________WD 8__________________
Query 1121 RPTLKKLVESWNKMLQKEMEHTSSEKTDAAAAFFASLEEPKLTTLADAGKKPPIEILPPGMPTLPSSNLAPKKPTPGAHG 1200
WD40-rpts ______________________________________)
Query 1201 ALQQPAKPLLLEAPPADPQQQTEGTPTQSEPTEQTSDGKAPTNTAATDTSPTTSVENVPIMLNGLEPSDIQLASSNTTPV 1280
WD40-rpts
Query 1281 ETQIIPPSSVNNTTHSEAVLESTELQNSSVPHSSSSNDAAPPSDAPFEPNGSDVQLQERKETIRNGRNLRAIDFDANNRP 1360
WD40-rpts
Query 1361 ITELWVIEIVTDPCEFRVIQMKQMVGTCEALVENTLALDGTISSSDFYKAACAFVHRWNLINSDFPSWSWIPCQKLRWIS 1440
WD40-rpts
Query 1441 SDDKAEGYLSLEKICLQRPQENEQEKGECFEEIDTAGNNNESLDEATLVPFPSDHQEVHYYDFQILHCASYSVPVLYFRA 1520
WD40-rpts
Query 1521 YSCVFPIQYTNFVKCTDGQPLTFEEMKKDLPSQSEDALLNSKWTFITQEEHPYLNRIWFKLHPCGTREWMKLLLLSDASW 1600
WD40-rpts
Query 1601 FKNAIAIERYVASWLSVVGQVVGLRIPMEMLKDGGGIQF 1639
WD40-rpts
 8 WD40-repeats found in QUERY=CmaCh17G013000 (Len=1639): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 1 1-39 6.04 364.35 0.00076 17.5% 54.48 WD 2: Seg 11 110-148 5.15 327.51 0.00240 17.5% 46.14 WD 3: Seg 14 159-197 4.55 302.67 0.00518 22.5% 21.74 WD 4: Seg 17 198-243 5.95 360.44 0.00086 27.5% 51.76 WD 5: Seg 21 244-294 6.11 366.90 0.00071 27.5% 47.92 WD 6: Seg 31 425-463 4.38 295.79 0.00641 20.0% 20.05 WD 7: Seg 33 465-505 4.60 304.73 0.00486 17.5% 53.57 WD 8: Seg 59 1042-1159 4.86 315.24 0.00351 22.5% 11.79Multiple sequence alignment of 8 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 1-39 MLR---------LRAFRPSNEKIVKIQM---HP---THPWLV----------TADA-----------S------------------------DHV----------------------S-----------VWN WD 2 110-148 -AE--------APSAVNQVTSAMSSFAP---ST---KGRHFL----------VICC-----------E------------------------NKA----------------------I-----------FLD WD 3 159-197 KQD---------LDNKSLLCMEFLSRTS---GG---EGPLVA----------FGGS-----------D------------------------GVI----------------------R-----------VLS WD 4 198-243 MLT-----WKLVRRYTGGHKGSISCLMTFMASS---GEALLV----------SGAS-----------D------------------------GLL----------------------I-----------LWS WD 5 244-294 ADNSQDSRELVPKLSLKAHDGGVIAVEL---SRVIGGAPQLI----------TIGA-----------D------------------------KTL----------------------A-----------IWD WD 6 425-463 ERE---------LKLLNFQLAHTTNPSL---GN---NGSLSE----------GGRL-----------K------------------------GDE----------------------L-----------LQV WD 7 465-505 QGK--------KHISTPVPHDAYSVLSV---SS---SGKYLA----------IIWP-----------D-----------------------IPYF----------------------S-----------IYK WD 8 1042-1159 AGS--------LKGALQGHELRGLALRL---AN---HGELTRLSGLVNNLISVGSGREAAFAAAVLGDNVLMEKAWQDTGMLAEAVLHAQAHGRPTLKKLVESWNKMLQKEMEHTSSEKTDAAAAFFASLEE WD40 Template TGE--------CLRTLSGHTSGVTSVSF---SP---DGKRLV----------SGSE-----------D------------------------GTI----------------------K-----------VWD |
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