Input parameters:

  Query = CmaCh02G005790 (Len=1625)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh02G005790, Len=1625):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEWNTIHHLDLRHVGRGLKPLQPHAAAFHPHQALVAVAIGTYIVECDALTGCKISSIDIGARVVRMSYSPKSGHAVIAML 80  
WD40-rpts              (_________________WD 1_________________)                               (

Query       81 QDCTIRSCDFDSEQTCVLHSPEKKMEQISSDTEVHLALTPLQPVVFFGFHKRMSVTVVGTVEGGRTPTKIKTDLKKPIVN 160 
WD40-rpts      _________________WD 2________________)                       (__________________

Query      161 LACHPRLPLLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLIGAGAFAFHPTLEWIFVGDRRGTLLAWDVSTERPSMIGI 240 
WD40-rpts      WD 3__________________)   (___________________WD 4__________________)(__________

Query      241 TQAGSQPITSVAWLPMLRLLVTLSSDGNLQVWKTRVILNPNRPPTQANFFEPAVIESIDIPRILSQQGGDTVYPLPRIKA 320 
WD40-rpts      _________WD 5___________________)                                     (_________

Query      321 LEVHPKLNLAALLFANMSGADTVKNRAAYTREGRKQLFAVLQSARGSSASVLKEKLSSLGASGILADHQLQAQLQEHTLK 400 
WD40-rpts      __________WD 6___________________)                                              

Query      401 GHSSLTISDIARKAFLYSHFMEGHSKTAPISRLPIISILDSKHHLKDVPVCQPFHLELSFFSKENRVLHYPVRAFYVDGQ 480 
WD40-rpts                                                                                      

Query      481 NLMAYNLCSGSDSIYKKLYTSIPGNVEFHPKFIAHSPKQRLFLVTYEFSGATNEVVLYWENSDSSTANSKCTTVKGRDAA 560 
WD40-rpts                                                                                      

Query      561 FIGPNENQFAILDDDKNGLALYILSGKTSQENDNEKVLEGNYATDTNNTSINKPIPFMFETEVDRIFSTPIESTLMLASH 640 
WD40-rpts                                                                                      

Query      641 GDQILLAKLVQGHRNSTVDGNYIPTKFEGRKSIKLRVNEIVLQVHWQETLRGLVAGILTTQRVLMISADLDILASSYAKF 720 
WD40-rpts                                                                                      

Query      721 DKGIPSISLTLVDKANMVEHLTNVHYRSLLWIGPALVFSTATAISVLGWDGKVRTILSISMPYAVLAGALNDRLLLANPT 800 
WD40-rpts                           (__________________________WD 7__________________________) 

Query      801 DINPRQKKGVEIRSCLVGLLEPLLIGFATMQQRFEQKLDLSEILYQITSRFDSLRITPRSLDILAGGPPVCGDLAVSLSQ 880 
WD40-rpts                                                                                      

Query      881 AGPQFTQDEFLRSRDYPRCPPTSHLFHRFRQLGYACIKFGQFDSAKETFEVIADNESILDLFICHLNPSALRRLAQKLEE 960 
WD40-rpts                                                                                      

Query      961 DGTDSELRRYCERILRVRSTGWTQGIFANFAAESMVPKGPEWGGGNWEIKTPTNLKAIPQWELAAEVLPYMKTDDGSIPS 1040
WD40-rpts                                                                                      

Query     1041 IVADHIGVHLGSVKGRGNIVEVVSEDSLVKSFTPAGGSVDKSSGLQTPLAKSISNKSKASSDGEPKDNLMGLETLMKQSS 1120
WD40-rpts                                                                                      

Query     1121 SSTSADEQTKAEEEFKKTMYGTANDGSSSDEENVSKARKLHIRIRDKPVTSPTVDVKKIKEATMQFKLGEGFGPPFSRTK 1200
WD40-rpts                                                                                      

Query     1201 SLTGNTQDLVQNLSQPPATAALTAPIVSAAPSDPFGTNSLMPPPVPVLQPPSQGTTGVGVAARPIPEDFFQNTIPSFQIA 1280
WD40-rpts                                                                                      

Query     1281 ASLPPPGTYLSQLDPSSRGVQTNKVSSNHVNAPGVNVDLPDGGVPPQVTQQPAVPFESIGLPDGGVPPQTLGQASAILPS 1360
WD40-rpts                                                                                      

Query     1361 VQPVQPAQPSLPSQPLDLSVLGVPNSVDSGKPPPPQATSVRPGQVPRGAAASVCFKTGLAHLEQNHLSDALSCFDEAFLA 1440
WD40-rpts                                                                                      

Query     1441 LAKDHSREADIKAQATICAQYKIAVTLLQEIGRLQKVQGPSALSAKDEMGRLSRHLGSLPLLAKHRINCIRTAIKRNMEV 1520
WD40-rpts                                                                                      

Query     1521 QNYSYSKQMLELLFSKAPASKQAELRSLIDICVQRGLMNKSIDPMEDPSMFCAATLSRLSTIGYDVCDLCGAKFSALTSP 1600
WD40-rpts                                                                                      

Query     1601 GCIICGMGSIKRSDALAEPVPSPFG 1625
WD40-rpts                               

7 WD40-repeats found in QUERY=CmaCh02G005790 (Len=1625):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2     9-48       4.53  301.72  0.00534        5.0%     32.40
  WD 2:  Seg  8    80-118      6.57  386.16  0.00039       22.5%     49.18
  WD 3:  Seg 14   142-183      7.85  439.11  7.5e-05       15.0%     47.86
  WD 4:  Seg 17   187-229      7.37  419.06  0.00014       25.0%     51.57
  WD 5:  Seg 21   230-273      7.99  444.84  6.3e-05       27.5%     53.60
  WD 6:  Seg 28   311-354      4.09  283.70  0.00932       12.5%     15.92
  WD 7:  Seg 42   742-799      3.08  241.84  0.03375       15.0%     15.89

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    9-48     LD----LRH---VGRGLKPL--------QPHAAAFHPHQALVAVAIG----------TYIVECDA
   WD 2   80-118    LQ----DCT---IRSCDFDS--------EQTCVLHSPEKK-MEQISS----------DTEVHLAL
   WD 3  142-183    EG--GRTPT---KIKTDLKK--------PIVNLACHPRLPLLYVAYA----------DGLIRAYN
   WD 4  187-229    -Y----AVH---YTLQLDNT----IKLIGAGAFAFHPTLEWIFVGDR----------RGTLLAWD
   WD 5  230-273    VSTERPSMI---GITQAGSQ--------PITSVAWLPMLRLLVTLSS----------DGNLQVWK
   WD 6  311-354    TV----YPLPRIKALEVHPK-------LNLAALLFANMSGADTVKNR----------AAYTREGR
   WD 7  742-799    TN----VHY---RSLLWIGPALVFSTATAISVLGWDGKVRTILSISMPYAVLAGALNDRLLLANP

   WD40 Template    TG----ECL---RTLSGHTS--------GVTSVSFSPDGKRLVSGSE----------DGTIKVWD