WDRR: WD40 Repeat Recognition
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| JobID: YHKH81659518709 Submitted: 2022-08-03 17:25:09 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79731713 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CsaV3_5G030770 (Len=445) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CsaV3_5G030770, Len=445): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MRVRSWLIPCSRAAATSAAEPNHIKPPQSSSFLMSDASSFSDTSAHSSSSSTPSSDTSSSSLQTNLSLQSLPSIPSLQKL 80
WD40-rpts (_________________WD 1___________
Query 81 PIPTDSFHVTLSQFPVASFKLPISHLAVHGPYLYVATAHEINVYDRLTFSHITGFNAPDSSSGSVKGIAFLPRQILTSHQ 160
WD40-rpts _____) (________________WD 2________
Query 161 DGKIRVWNLLHKKNNQFKLVNTLPTVNDRLRRFILPKNYVNVRRHKKLLWIQHADAVTGLAVNNGSIYSVSWDRSLKIWR 240
WD40-rpts _______)(________________WD 3_______________)(_______________WD 4______________)
Query 241 GSDHRCVESVKAAHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPEAEKRHVLVATLEKHKSAVNALALNEDGSLLFSGAC 320
WD40-rpts (_________________WD 5________________)(____________________WD 6_____________
Query 321 DRSVLVWEREDSANYMAVIGALRGHKNAILCLIYVSDLLLSGSADRTVRVWRRGGDGSFSCLTVLEGHKKPVKSLVIVSE 400
WD40-rpts _______) (________________WD 7_______________) (_____________________
Query 401 AEGMMRNGGVVSVCSGSLDGELKAWKISLSNLNSPLPNSNIMNCS 445
WD40-rpts WD 8_____________________)
 8 WD40-repeats found in QUERY=CsaV3_5G030770 (Len=445): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 2 48-86 2.98 237.68 0.03832 10.0% -16.07 WD 2: Seg 6 132-168 6.74 392.96 0.00031 20.0% 45.64 WD 3: Seg 10 169-205 4.01 280.50 0.01029 10.0% 17.68 WD 4: Seg 13 206-240 6.15 368.67 0.00067 20.0% 47.53 WD 5: Seg 17 244-282 7.10 408.04 0.00020 30.0% 51.04 WD 6: Seg 21 283-328 9.39 502.55 1.0e-05 35.0% 53.23 WD 7: Seg 25 336-372 7.36 418.89 0.00014 30.0% 50.05 WD 8: Seg 29 379-426 7.84 438.51 7.7e-05 35.0% 54.29Multiple sequence alignment of 8 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 48-86 -SS------SSTPS-SDTSSSSLQTNLSLQSL---------PSIPSLQKLPIPTDS WD 2 132-168 -IT------GFNAP-DSSSGSVKGIAFLPR-----------QILTSHQDGKIRVWN WD 3 169-205 ---------LLHKK-NNQFKLVNTLPTVNDRL---------RRFILPKNYVNVRRH WD 4 206-240 ---------KKLLW-IQHADAVTGLAVNNGS-----------IYSVSWDRSLKIWR WD 5 244-282 -HR------CVESVKAAHEDAVNAVAVSAGG----------TVYTGSADRKIRVWA WD 6 283-328 KPEAEKRHVLVATL-EKHKSAVNALALNEDGS---------LLFSGACDRSVLVWE WD 7 336-372 -MA------VIGAL-RGHKNAILCLIYVSD-----------LLLSGSADRTVRVWR WD 8 379-426 -FS------CLTVL-EGHKKPVKSLVIVSEAEGMMRNGGVVSVCSGSLDGELKAWK WD40 Template TGE------CLRTL-SGHTSGVTSVSFSPDGK---------RLVSGSEDGTIKVWD |
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