Input parameters:

  Query = sp_Q06339_TFC6_YEAST (Len=672)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (sp_Q06339_TFC6_YEAST, Len=672):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAVIPAKKRGRPRKSVVAEVPYDSLASPVSENSGSKRPRRNASKKAVANFAQLVHAGRDDVINTTQVNNVDDTDDDDFVL 80  
WD40-rpts                                                                                      

Query       81 NDEGDGEESDNVEIEFENELESTKNEVADLNSSGSGASVRPSGRRNTVQKLRLKKNSTKNMKSSSPGSSLGQKGRPIRLL 160 
WD40-rpts                                                                                      

Query      161 KDLSSARDKIERIYGLNKEKLLLLAKVKEGFETSVFDFPFKNIQPDSPYFVCLDPPCKKESAYNKVIGDKNRTVYHEINK 240 
WD40-rpts                                                                                      

Query      241 TEFENMIKLRTKRLKLLIGEVDAEVSTGDKIEFPVLANGKRRGFIYNVGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQY 320 
WD40-rpts                                                                                      

Query      321 MDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIID 400 
WD40-rpts                                (_______________________WD 1______________________)   

Query      401 NATDVHVFKMCEKPSLTLSLADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDT 480 
WD40-rpts                (_________________WD 2________________)(____________________WD 3______

Query      481 VVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIG 560 
WD40-rpts      ______________)(___________________WD 4___________________)   (_________________

Query      561 VSRLHPMVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGI 640 
WD40-rpts      ___WD 5___________________)                                                     

Query      641 NITCTKWNETSAGGKCYAFSNSAGLLTLEYLS 672 
WD40-rpts                                      

5 WD40-repeats found in QUERY=sp_Q06339_TFC6_YEAST (Len=672):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 11   347-397      3.43  256.17  0.02176       20.0%     44.15
  WD 2:  Seg 16   411-449      5.59  345.45  0.00138       25.0%     48.85
  WD 3:  Seg 20   450-495      3.96  278.40  0.01097       17.5%     42.95
  WD 4:  Seg 24   496-539      3.56  261.83  0.01829       10.0%     30.20
  WD 5:  Seg 28   543-587      5.71  350.34  0.00118       17.5%     44.50

Multiple sequence alignment of 5 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  347-397    NTS---TLHCVKVQT----IVHSFGEVWDLK---WHEGCHAPHLVGCLSFVSQEGTINFLE------
   WD 2  411-449    CEK---PS-----LT----LSLADSLITTFD---FLSPT-------TVVCGFKNGFVAEFD------
   WD 3  450-495    LTDPEVPS-----FY----DQVHDSYILSVSTAYSDFEDT------VVSTVAVDGYFYIFN------
   WD 4  496-539    PKD---IA-----TTKTTVSRFRGSNLVPVV---YCPQIY------SYIYSDGASSLRAVP------
   WD 5  543-587    -AF---AV-----HP----LVSRETTITAIG---VSRLHP------MVLAGSADGSLIITNAARRLL

   WD40 Template    TGE---CL-----RT----LSGHTSGVTSVS---FSPDGK------RLVSGSEDGTIKVWD------