Input parameters:

  Query = sp_O42839_APC4_SCHPO (Len=719)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (sp_O42839_APC4_SCHPO, Len=719):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MVSKSFKYPKKHKFEWINETNRVERVGSGLKRVILCPSMELIAILTCSNHLICCRSNSQRIWDVDFHDLEATELCWNHDG 80  
WD40-rpts                        (________________WD 1_______________) (_________________WD 2__

Query       81 NLIVVGFKNGELKIIDSSTGHLVEQRPASRDLAVLMITWAMQETIVNEKRNDFLFDATAYMPLLGTLPSSAKEERIFSSK 160 
WD40-rpts      _______________)                                                                

Query      161 AIAQFFEPRKREGENNKKVELLSILDERGIRYINMFSSYKIGESDSLKSALNLGVPISHSITNDLAYHVLICKGGTNISL 240 
WD40-rpts                                                                                      

Query      241 KTLYMPLLKNDLGSIVDIATMSTRMQHLVRYLEEVLNAMYEEFDNVFKSEASFIKTFDALVSKYSDTTFFSLQLELYQFI 320 
WD40-rpts                                                                                      

Query      321 MNGIPSDLLKEWINERVGDRVLKNWERAMVNSYTSLIIFCQEFVIPACERLTVLLSSARGKSIWGHMKGNTLLDAKLVED 400 
WD40-rpts                                                                                      

Query      401 CLATLGYLQNNVFSFLNCLFEEKKYMKHFISWLNYAIVEFNTSEPSSIPPQEIIEHINETVIYIRHSLFRSKLTSYFMGT 480 
WD40-rpts                                                                                      

Query      481 KPLQLRDPDYYSLKDFANQDDSNSVDDFVSFKTLKESLRDSFNVIFSYPSLTCQKQWLKTGDLVLFEGTDWNVSSLIPKS 560 
WD40-rpts                                                                                      

Query      561 CNEKNQLFSLFFRKDTPNIFLIISQLMENTMLPVSGCHFGLDYAELLGSSLLDFQPATVLDMKLLNGSSILILGKLKEKC 640 
WD40-rpts                                                                                      

Query      641 FLCEICLADVPLTFFEHQQKNSYLDAISHLPFIPLNSCLWLHEFEKDFLPSTLEYALSENSDYGVLISRESSRYRLFSF 719 
WD40-rpts                                                                                     

2 WD40-repeats found in QUERY=sp_O42839_APC4_SCHPO (Len=719):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    19-55       4.06  282.47  0.00968       10.0%     45.14
  WD 2:  Seg  5    57-96       8.19  452.89  4.9e-05       22.5%     57.02

Multiple sequence alignment of 2 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   19-55     ---ETNRVERVGSGLKRVILCPSMELIAILTCSNHLICCR
   WD 2   57-96     NSQRIWDVDFHDLEATELCWNHDGNLIVVGFKNGELKIID

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD