JobID: YAOO41659514133 - WDRR: WD40 Repeat Recognition

Input parameters:

  Query = CsaV3_2G012260 (Len=775)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_2G012260, Len=775):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MMRASFGAFDESNSPSTSTPPLPPHVSHPPLPYPTNRQRVSNVFQLLAQREVSPQTKRASRRFWGDSHDRQCDSVGPRCE 80  
WD40-rpts                                                                      (_______________

Query       81 AARDAKRGLISWVEAESLRHLSAKYCPLLPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGTCLKVLSGHRRTPWVV 160 
WD40-rpts      _WD 1________________)_________________WD 2________________)   (________________

Query      161 RFHPLYPEILASGSLDYDVRLWDANTAECIGSRDFYRPIASIAFHAQGELLAVASGHKLYIWHYNKRGETPSPTIVLRTR 240 
WD40-rpts      _WD 3_________________)   (________________WD 4_______________)      (__________

Query      241 RSLRAVHFHPHAAQFLLTAEVNDLDTSESAITLATSPGYVQYPPPTVYFADAHSSDRSSLMDGLPLMSFPLLIWPSFSKE 320 
WD40-rpts      ____WD 5______________)   (_______________WD 6_______________)(_________________

Query      321 NRRMSMQRTEGDPGAGRLQRVDPSASVRLLTYSTPSGQYELVLSPIEPNSSSPVPEETGTNHYSSEMETEVSETAGDASE 400 
WD40-rpts      _____WD 7_____________________)     (_________________WD 8________________)     

Query      401 NMEVQTEVRNNQNFPFNDPWELPFLQGWLIGQSQASQHALRPHSDDVRENSSAPSDIGGIHAPLTSLIPTSASQSRVGRR 480 
WD40-rpts                                                                                      

Query      481 SSSRHRSMRSRVPVPVSGSDEGGSMSNTIPDESDPQPIVSRIQSELAASLAAVAAAELPCTVKLRIWSHDVKNPCAPLDD 560 
WD40-rpts                                                                             (________

Query      561 ERCRLIIPHAVLCSEMGAHFSPCGRFLAACVACMLPHMEADPGFQSHANSDATGAATSPTRHPISAQQVMYELRIYSLEE 640 
WD40-rpts      ______________WD 9_____________________)(________________WD10_______________)(__

Query      641 ATFGVVLASRAIRAAHCLTSIQFSPTSEHLLLAYGRRHSSLLKSVVVDGETTVPIYTILEVYRVSNMELVRVLPSAEDEV 720 
WD40-rpts      ___________________WD11_____________________)                     (_____________

Query      721 NVACFHPSVGGGVVYGTKEGKLRILQYDSSQAINHSTYGFLDENMLEVPTYALEC 775 
WD40-rpts      ____WD12_________________)

12 WD40-repeats found in QUERY=CsaV3_2G012260 (Len=775):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4    65-102      3.24  248.41  0.02761       10.0%     32.15
  WD 2:  Seg  7   102-140      8.45  463.72  3.5e-05       30.0%     50.56
  WD 3:  Seg 11   144-183      8.81  478.64  2.2e-05       42.5%     55.01
  WD 4:  Seg 15   187-223      6.04  364.07  0.00077       20.0%     54.55
  WD 5:  Seg 19   230-263      3.83  272.89  0.01301       15.0%     36.80
  WD 6:  Seg 22   267-302      5.94  359.96  0.00088       15.0%     49.77
  WD 7:  Seg 26   303-351      5.64  347.69  0.00128        7.5%     36.18
  WD 8:  Seg 30   357-395      7.30  416.40  0.00015       15.0%     35.01
  WD 9:  Seg 41   552-600      3.09  242.22  0.03336       15.0%     24.11
  WD10:  Seg 45   601-637      5.59  345.48  0.00137       12.5%     20.77
  WD11:  Seg 47   638-685      4.19  287.66  0.00824       20.0%     38.82
  WD12:  Seg 52   707-746      7.53  425.86  0.00011       25.0%     49.21

Multiple sequence alignment of 12 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   65-102    GDS--------H---------DRQCDSVGPR----------CEAARD-A-KRGL--ISWVEAESLRHLS
   WD 2  102-140    -SA------KYC---------PLLPPPRSTI----------AAAFSP-D-GRTL--ASTHGDHTVKIID
   WD 3  144-183    -GT------CLK---------VLSGHRRTPW----------VVRFHPLY-PEIL--ASGSLDYDVRLWD
   WD 4  187-223    -AE------CIG---------SRDFYRP-IA----------SIAFHA-Q-GELL--AVAS-GHKLYIWH
   WD 5  230-263    -TP------SPT---------IVLRTRRSLR----------AVHFHP-H-AAQF--LL-----TAEVND
   WD 6  267-302    -SE------SAI---------TLATSPG-------------YVQYPP-P-TVYF--ADAHSSDRSSLMD
   WD 7  303-351    GLP------LMSFPLLIWPSFSKENRRMSMQ----------RTEGDP-G-AGRL--QRVDPSASVRLLT
   WD 8  357-395    -GQ------YEL---------VLSPIEPNSS----------SPVPEE-T-GTNH--YSSEMETEVSETA
   WD 9  552-600    -KN------PCA---------PLDDERCRLIIPHAVLCSEMGAHFSP-C-GRFL--AACVACMLPHMEA
   WD10  601-637    DPG------F------------QSHANSDAT----------GAATSP-T-RHPI--SAQQVMYELRIYS
   WD11  638-685    LEEATFGVVLAS---------RAIRAAHCLT----------SIQFSP-T-SEHLLLAYGRRHSSLLKSV
   WD12  707-746    -ME------LVR---------VLPSAEDEVN----------VACFHP-SVGGGV--VYGTKEGKLRILQ

   WD40 Template    TGE------CLR---------TLSGHTSGVT----------SVSFSP-D-GKRL--VSGSEDGTIKVWD