Input parameters:

  Query = CsaV3_4G033700 (Len=850)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_4G033700, Len=850):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MFVCWLMCCFKWITMEGSSDHLRNLDDISGVCEEDILADPYLRSHKWSDISLRQWLDKPGRSVDALECLHIFRQIVEIVN 80  
WD40-rpts                                                                                      

Query       81 IAHAQGIVVHNVRPSCFVMSSFNHVTFIESASCSDSGSDSLEDGINSQMAEVKTSSSPFPSSLGSEGFRSVMTPINALSE 160 
WD40-rpts                                                                                      

Query      161 TSCMQSSSIYAAQASLNEGFGKFRKKDRRHIEETEDKVQSFPMKQILAMETTWYTSPEEASDSPSSSASDIYRLGVLLFE 240 
WD40-rpts                                                                                      

Query      241 LFCSFSSREEKNRTMSSLRHRVLPTQLLLKWPKEASFCLWLLHPEPTNRPKLSELLQSVFLNEPKDDLEEREAAIKLRKK 320 
WD40-rpts                                                                                      

Query      321 IEEQELLLEFLLLMQQRKQEAAHKLQDTISFLCSDIEQVMRHQTNFKKNIGSHTDLVKDNHLPLNLPSMPPVRNTDSAAL 400 
WD40-rpts                                                                                      

Query      401 GSRKRFRPGILTHDIEACGDNLDHCSKTSSENDNEQGVLFKSSRLMKNFKKLELAYFLMRGRVNKPSRQFVKHSSVSSDG 480 
WD40-rpts                                                                                      

Query      481 RGSVVLTERSSVNNLASKESCNDNRQGGWISPFLEGLCKYLSFSKLKVKADLKQGDLLNSSNLVCSLSFDRDGEFFATAG 560 
WD40-rpts                                                (_____________________WD 1____________

Query      561 VNRKIKVFGYDSIVNEDRDIHYPVVEMASRSKLSSVCWNRYIKSQIASSNFEGVVQVWDVTRSQVVTEMGEHERRVWSID 640 
WD40-rpts      ________)          (_________________WD 2_________________)   (_________________

Query      641 FSSADPTILASGSDDGSVKLWSINQGISIGTIRTKANVCCVQFPVDSGRSLAFGSADHKIYYYDMRNIRVPLCTFTGHNK 720 
WD40-rpts      WD 3_________________)   (_________________WD 4________________)(_______________

Query      721 TVSYVKYIDSSTLVSASTDNTLKLWDLSMSTSRVVDSPVQSFTGHMNIKNFVGLSVSDGYIATGSETNEVFVYHKAFPMP 800 
WD40-rpts      ___WD 5__________________)         (_________________WD 6________________)      

Query      801 ALSYKFQIDPLSSHEMDDSAQFISSVCWRSQSSSLVAANSTGHIKILEMV 850 
WD40-rpts               (_________________WD 7________________)  

7 WD40-repeats found in QUERY=CsaV3_4G033700 (Len=850):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 11   523-569      7.62  429.39  0.00010       25.0%     53.81
  WD 2:  Seg 15   580-619      6.44  380.55  0.00046       22.5%     49.89
  WD 3:  Seg 19   623-662      8.71  474.56  2.5e-05       35.0%     55.21
  WD 4:  Seg 23   666-704      6.51  383.50  0.00042       32.5%     56.73
  WD 5:  Seg 27   705-746      7.93  442.05  6.9e-05       40.0%     52.15
  WD 6:  Seg 31   756-794      7.80  436.77  8.1e-05       20.0%     52.86
  WD 7:  Seg 34   810-848      5.30  333.50  0.00199       17.5%     46.70

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  523-569    FSK---LKVKADLKQGDLLNSSNLVCSLSFDR-D-GE-FFATAGVNRKIKVFG
   WD 2  580-619    -IH---YP-------VVEMASRSKLSSVCWNR-Y-IKSQIASSNFEGVVQVWD
   WD 3  623-662    -SQ---VV-------TEMGEHERRVWSIDFSSAD-PT-ILASGSDDGSVKLWS
   WD 4  666-704    -GI---SI-------GTIRTKAN-VCCVQFPV-DSGR-SLAFGSADHKIYYYD
   WD 5  705-746    MRNIRVPL-------CTFTGHNKTVSYVKY-I-D-SS-TLVSASTDNTLKLWD
   WD 6  756-794    -DS---PV-------QSFTGHMNIKNFVGLSV-S-DG-YIATGSETNEVFVYH
   WD 7  810-848    -PL---SS-------HEMDDSAQFISSVCWRS-Q-SS-SLVAANSTGHIKILE

   WD40 Template    TGE---CL-------RTLSGHTSGVTSVSFSP-D-GK-RLVSGSEDGTIKVWD