Input parameters:

  Query = CmaCh17G011410 (Len=553)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh17G011410, Len=553):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MIRTVRSQFILSGKAYLLYIFMLLLSMGEPNSLSLTRTFLAKPKLKAKARTPKETPESKYWSSFKRHEIPNLVSSISSVS 80  
WD40-rpts                 (_______________________WD 1______________________)     (____________

Query       81 FCPTNPSIFSASHSTSLTLFSTETMAPTSAITSFRDVVSCASFRCDGLLIAASDLSGLVQVFDVKSRTPLRKLRSHSRPV 160 
WD40-rpts      __WD 2______________)   (_________________WD 3________________)   (_____________

Query      161 HFVQYPVLDKLHLLSGGDDAVVKYWDVASQTPLLDFLGHKDYVRSGACSPSSMDMFVTGSYDHTVKLWDARTNSKSVLEV 240 
WD40-rpts      ____WD 4_________________)   (_________________WD 5_________________)   (_______

Query      241 NHGKPVEDVIFLPSGGLVATAGGNSVKIWDVIGGGKMVGSMESHIKTVTSLCVGKLGKDSGEESDQFRILSVALDGYMKV 320 
WD40-rpts      _________WD 6________________)    (_____________________WD 7____________________

Query      321 FDYSKMKVTHSMRFPTPLMSVGFSPDCSSRVIGTSNGILYAGKRKTKGITASNLSNPWSLGSVGEPQRRGLRPSHFRYFH 400 
WD40-rpts      _)   (________________WD 8________________)   (________________WD 9_____________

Query      401 RGQGEKPTEGDYLVMKPKKLKLTEHDKLLKKFRHKDALVSVLASKNPENVVAVMEELVARKKLLKCVSNLNMEELGLLLV 480 
WD40-rpts      ___)                                                                            

Query      481 FLQKHSTLPRYSSLLMGLARKVLELRAEDIRASGALKDHIRNLKRSVDEEIRIQQSLLEIQGIISPLLRIAGR 553 
WD40-rpts                                                                               

9 WD40-repeats found in QUERY=CmaCh17G011410 (Len=553):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    12-62       8.02  445.77  6.1e-05       12.5%     11.73
  WD 2:  Seg  5    68-101      6.59  386.74  0.00038       20.0%     50.10
  WD 3:  Seg  8   105-143      8.05  447.39  5.8e-05       20.0%     56.58
  WD 4:  Seg 12   147-186      8.11  449.59  5.4e-05       35.0%     56.33
  WD 5:  Seg 16   190-229      8.09  448.78  5.6e-05       37.5%     55.38
  WD 6:  Seg 20   233-270      7.00  403.75  0.00023       22.5%     52.63
  WD 7:  Seg 24   275-322      7.52  425.36  0.00012       35.0%     58.57
  WD 8:  Seg 28   326-363      6.54  384.76  0.00041       25.0%     56.92
  WD 9:  Seg 32   367-404      3.05  240.59  0.03507       10.0%      9.08

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   12-62     SGKAYLLYIFMLLLSMGEPNSLSLTRTFLAKPK-LKA---------KARTPKETPESKYWS
   WD 2   68-101    -----------------EIPNLVSSISSVSFCP-TNP---------SIFSASHSTSLTLFS
   WD 3  105-143    -MAPT-----------SAITSFRDVVSCASFRC-DGL---------LIAASDLSGLVQVFD
   WD 4  147-186    -RTPL-----------RKLRSHSRPVHFVQYPVLDKL---------HLLSGGDDAVVKYWD
   WD 5  190-229    -QTPL-----------LDFLGHKDYVRSGACSP-SSM--------DMFVTGSYDHTVKLWD
   WD 6  233-270    -NSKS-----------VLEVNHGKPVEDVIFLP-SGG---------LVATAG-GNSVKIWD
   WD 7  275-322    -GKMV-----------GSMESHIKTVTSLCVGK-LGKDSGEESDQFRILSVALDGYMKVFD
   WD 8  326-363    -MKVT-----------HSMRFPTP-LMSVGFSP-DCS---------SRVIGTSNGILYAGK
   WD 9  367-404    -KGIT-----------ASNLSNPWSLGSV-GEP-QRR---------GLRPSHFRYFHRGQG

   WD40 Template    TGECL-----------RTLSGHTSGVTSVSFSP-DGK---------RLVSGSEDGTIKVWD